Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QYM22_RS21450 Genome accession   NZ_CP129342
Coordinates   4077201..4077890 (-) Length   229 a.a.
NCBI ID   WP_046130088.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4072201..4082890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS21415 (QYM22_21415) - 4072355..4072831 (-) 477 WP_046130082.1 flagellar protein FlgN -
  QYM22_RS21420 (QYM22_21420) flgM 4072853..4073119 (-) 267 WP_046130083.1 flagellar biosynthesis anti-sigma factor FlgM -
  QYM22_RS21425 (QYM22_21425) - 4073199..4073618 (-) 420 WP_046130084.1 TIGR03826 family flagellar region protein -
  QYM22_RS21430 (QYM22_21430) - 4073676..4074364 (-) 689 Protein_4194 phosphoribosyltransferase family protein -
  QYM22_RS21435 (QYM22_21435) - 4074352..4074654 (-) 303 WP_046130085.1 competence protein ComFB -
  QYM22_RS21440 (QYM22_21440) comFA 4074710..4076119 (-) 1410 WP_046130086.1 DEAD/DEAH box helicase Machinery gene
  QYM22_RS21445 (QYM22_21445) - 4076238..4077080 (-) 843 WP_065894697.1 DegV family protein -
  QYM22_RS21450 (QYM22_21450) degU 4077201..4077890 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  QYM22_RS21455 (QYM22_21455) degS 4077973..4079130 (-) 1158 WP_046130089.1 histidine kinase Regulator
  QYM22_RS21460 (QYM22_21460) - 4079350..4079988 (+) 639 WP_046130090.1 YigZ family protein -
  QYM22_RS21465 (QYM22_21465) - 4080003..4081094 (+) 1092 WP_046130091.1 LCP family protein -
  QYM22_RS21470 (QYM22_21470) - 4081146..4082210 (-) 1065 WP_046130092.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25860.54 Da        Isoelectric Point: 5.9436

>NTDB_id=852514 QYM22_RS21450 WP_046130088.1 4077201..4077890(-) (degU) [Bacillus glycinifermentans strain SRCM12603]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDMYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=852514 QYM22_RS21450 WP_046130088.1 4077201..4077890(-) (degU) [Bacillus glycinifermentans strain SRCM12603]
GTGACTAAAGTAAATATTGTAATTATTGATGACCATCAGTTATTCCGTGAAGGAGTAAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCTGAAGGAGACGACGGTGACGAAGCGGCTCGCATTGTCGAGCACTATCATCCGGATGTAGTCA
TCATGGACATCAATATGCCGAATGTAAACGGAGTTGAAGCGACAAAACAACTTGTCGATATGTATCCGGAATCAAAGGTC
ATAATTTTATCGATCCATGATGATGAAAACTATGTGACACATGCGTTAAAAACCGGAGCACGCGGCTATCTGCTTAAAGA
GATGGATGCCGATACACTGATTGAAGCCGTAAAGGTAGTGGCTGAAGGCGGTTCTTACCTTCACCCTAAGGTTACGCACA
ATCTTGTCAACGAATTTCGCCGTCTGGCAACAAGCGGCGTGTCATCTCACGCTCAGCACGAAGTGTATCCAGAAATCCGC
AGACCTTTGCACATTCTCACAAGGCGGGAATGCGAAGTATTGCAAATGCTCGCGGACGGAAAGAGCAACCGCGGCATAGG
AGAATCTTTATTTATCAGTGAAAAAACGGTTAAAAACCACGTCAGCAACATCCTGCAGAAAATGAACGTAAACGACAGAA
CTCAAGCAGTCGTTGTGGCCATCAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983