Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QYM22_RS21440 Genome accession   NZ_CP129342
Coordinates   4074710..4076119 (-) Length   469 a.a.
NCBI ID   WP_046130086.1    Uniprot ID   A0AAJ3Z1X9
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4069710..4081119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS21405 (QYM22_21405) flgL 4069887..4070804 (-) 918 WP_046130164.1 flagellar hook-associated protein FlgL -
  QYM22_RS21410 (QYM22_21410) flgK 4070814..4072337 (-) 1524 WP_046130081.1 flagellar hook-associated protein FlgK -
  QYM22_RS21415 (QYM22_21415) - 4072355..4072831 (-) 477 WP_046130082.1 flagellar protein FlgN -
  QYM22_RS21420 (QYM22_21420) flgM 4072853..4073119 (-) 267 WP_046130083.1 flagellar biosynthesis anti-sigma factor FlgM -
  QYM22_RS21425 (QYM22_21425) - 4073199..4073618 (-) 420 WP_046130084.1 TIGR03826 family flagellar region protein -
  QYM22_RS21430 (QYM22_21430) - 4073676..4074364 (-) 689 Protein_4194 phosphoribosyltransferase family protein -
  QYM22_RS21435 (QYM22_21435) - 4074352..4074654 (-) 303 WP_046130085.1 competence protein ComFB -
  QYM22_RS21440 (QYM22_21440) comFA 4074710..4076119 (-) 1410 WP_046130086.1 DEAD/DEAH box helicase Machinery gene
  QYM22_RS21445 (QYM22_21445) - 4076238..4077080 (-) 843 WP_065894697.1 DegV family protein -
  QYM22_RS21450 (QYM22_21450) degU 4077201..4077890 (-) 690 WP_046130088.1 two-component system response regulator DegU Regulator
  QYM22_RS21455 (QYM22_21455) degS 4077973..4079130 (-) 1158 WP_046130089.1 histidine kinase Regulator
  QYM22_RS21460 (QYM22_21460) - 4079350..4079988 (+) 639 WP_046130090.1 YigZ family protein -
  QYM22_RS21465 (QYM22_21465) - 4080003..4081094 (+) 1092 WP_046130091.1 LCP family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 53064.68 Da        Isoelectric Point: 9.6483

>NTDB_id=852513 QYM22_RS21440 WP_046130086.1 4074710..4076119(-) (comFA) [Bacillus glycinifermentans strain SRCM12603]
MEVIVIAGKQPASEYSRNLQSLLESRHLLKSELPFPDDVIDWHIQKGLIKAEKPIEETTKGFVCKRCGQDHQALFARYPC
YACNQQCVYCRSCVMMGRVSECTPLLTWKGGDQSKWPPVRMVWEGILSAGQEKAARSIIEAIRKKEELLIWAVCGSGKTE
ILFQGIEFALNHGLRVCIATPRTDVVLELAPRVKKAFEGAEIAALYGGSPDRGMLSPLMISTTHQLFRYKEAFDVMVVDE
VDAFPYSYDQTLQYAVEKAGKRQSARIYLTATPSREMKKRAESGRLKAAHIPARYHRSPMPEPSFTWCGNWKKSLKCHII
PLAVKRWLFKHKEQKQPVFLFVPSIPALKSVVTLLKKEHFQIEGVYADDPDRNEKVKRFRDGTLDILVTTTILERGVTVQ
KAQVGVLGAESAVFDESALVQISGRAGRHPQYTTGDVRFFHFGKTANMVAARRHIRRMNKMALLENLVD

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=852513 QYM22_RS21440 WP_046130086.1 4074710..4076119(-) (comFA) [Bacillus glycinifermentans strain SRCM12603]
TTGGAGGTGATCGTTATCGCTGGAAAGCAGCCCGCATCTGAATACTCCCGCAATTTACAGTCTTTGCTTGAATCCCGCCA
TCTTCTCAAAAGTGAACTTCCCTTTCCCGATGATGTGATTGATTGGCACATCCAAAAAGGCTTGATCAAAGCAGAAAAAC
CGATTGAAGAAACGACCAAAGGCTTTGTCTGCAAGCGGTGCGGCCAGGATCATCAGGCGCTTTTCGCCCGGTACCCTTGT
TATGCATGCAATCAACAATGTGTCTACTGCCGTTCGTGCGTCATGATGGGCAGAGTAAGCGAATGTACACCCCTATTGAC
TTGGAAAGGCGGTGATCAATCTAAATGGCCGCCCGTCCGCATGGTTTGGGAGGGAATTCTTTCGGCGGGCCAGGAAAAAG
CGGCAAGATCGATTATTGAAGCGATTCGAAAAAAAGAAGAGCTTTTAATTTGGGCGGTTTGCGGATCAGGCAAAACGGAA
ATTTTGTTTCAGGGAATCGAATTTGCTTTAAACCATGGCTTGAGAGTATGTATAGCCACTCCGAGAACGGATGTGGTGCT
GGAGCTTGCCCCGCGCGTAAAGAAAGCTTTTGAAGGCGCAGAAATTGCCGCTTTATACGGAGGGAGTCCCGATAGAGGGA
TGCTTTCGCCTCTTATGATATCGACCACCCATCAGCTTTTCCGATATAAAGAAGCGTTCGATGTGATGGTCGTTGATGAG
GTTGATGCGTTCCCGTACAGTTATGATCAAACATTGCAGTACGCCGTAGAAAAAGCAGGGAAACGGCAAAGCGCCCGAAT
TTATTTAACAGCCACCCCTTCCCGGGAAATGAAAAAACGAGCTGAAAGCGGGCGGCTCAAGGCCGCTCACATCCCGGCCC
GGTATCATCGGAGTCCAATGCCTGAACCGTCATTTACGTGGTGCGGAAACTGGAAAAAGAGTCTCAAATGCCACATTATT
CCTTTAGCCGTCAAAAGATGGCTTTTCAAACATAAAGAGCAAAAACAGCCGGTCTTTTTATTTGTTCCGTCTATTCCGGC
GCTCAAATCTGTGGTTACCCTGTTAAAGAAGGAACATTTTCAAATCGAAGGCGTTTATGCCGATGACCCGGATAGAAATG
AAAAGGTAAAACGGTTTAGGGATGGGACGCTTGATATCCTCGTCACGACGACCATTTTGGAAAGAGGCGTGACGGTCCAA
AAAGCACAAGTCGGAGTGCTGGGCGCTGAATCGGCCGTTTTTGACGAAAGCGCGCTTGTCCAAATATCGGGAAGAGCCGG
GAGGCACCCTCAATATACAACGGGTGACGTCCGTTTTTTTCACTTCGGCAAGACGGCGAACATGGTCGCAGCTCGCCGTC
ATATTCGCCGAATGAATAAAATGGCTTTACTGGAAAATTTGGTTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(128-275)

Helicase conserved C-terminal domain (Helicase_C)

(327-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

60.889

95.949

0.584