Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QYH53_RS03185 Genome accession   NZ_CP129340
Coordinates   623632..623859 (+) Length   75 a.a.
NCBI ID   WP_301410318.1    Uniprot ID   -
Organism   Ligilactobacillus animalis strain SRCM217975     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 618632..628859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH53_RS03165 (QYH53_03165) - 618642..620471 (+) 1830 WP_035447361.1 APC family permease -
  QYH53_RS03170 (QYH53_03170) - 620634..621728 (+) 1095 WP_010689420.1 MraY family glycosyltransferase -
  QYH53_RS03175 (QYH53_03175) - 621774..622421 (-) 648 WP_279074097.1 YigZ family protein -
  QYH53_RS03180 (QYH53_03180) - 622575..623603 (+) 1029 WP_301410317.1 DEAD/DEAH box helicase family protein -
  QYH53_RS03185 (QYH53_03185) comFA 623632..623859 (+) 228 WP_301410318.1 helicase-related protein Machinery gene
  QYH53_RS03190 (QYH53_03190) - 623903..624592 (+) 690 WP_225361399.1 phosphoribosyltransferase family protein -
  QYH53_RS03195 (QYH53_03195) raiA 624743..625297 (+) 555 WP_004048318.1 ribosome-associated translation inhibitor RaiA -
  QYH53_RS03200 (QYH53_03200) secA 625455..627815 (+) 2361 WP_010689416.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 8256.59 Da        Isoelectric Point: 9.6572

>NTDB_id=852407 QYH53_RS03185 WP_301410318.1 623632..623859(+) (comFA) [Ligilactobacillus animalis strain SRCM217975]
MRTGSDRYLVTTTILERGITIARLNVMVLQADAPVFSETVLVQIAGRVGRDKDYPTGDVILAYQEMTSALRAAKK

Nucleotide


Download         Length: 228 bp        

>NTDB_id=852407 QYH53_RS03185 WP_301410318.1 623632..623859(+) (comFA) [Ligilactobacillus animalis strain SRCM217975]
TTGCGCACTGGGAGCGATCGCTATTTAGTAACGACTACTATCCTTGAACGTGGGATCACGATCGCTCGTTTGAATGTCAT
GGTATTGCAAGCCGATGCACCGGTCTTTTCTGAGACGGTCTTAGTTCAGATCGCGGGCCGTGTTGGCAGAGATAAAGACT
ACCCAACAGGAGATGTGATCTTGGCTTATCAGGAAATGACATCGGCTTTACGCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

51.389

96

0.493
  comFA Bacillus subtilis subsp. subtilis str. 168

47.297

98.667

0.467
  comFA/cflA Streptococcus pneumoniae Rx1

40.541

98.667

0.4
  comFA/cflA Streptococcus pneumoniae R6

40.541

98.667

0.4
  comFA/cflA Streptococcus pneumoniae TIGR4

40.541

98.667

0.4
  comFA/cflA Streptococcus pneumoniae D39

40.541

98.667

0.4
  comFA/cflA Streptococcus mitis SK321

40.541

98.667

0.4
  comFA Lactococcus lactis subsp. cremoris KW2

43.284

89.333

0.387
  comFA/cflA Streptococcus mitis NCTC 12261

41.791

89.333

0.373