Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QYC34_RS20265 Genome accession   NZ_CP129338
Coordinates   3753086..3754477 (-) Length   463 a.a.
NCBI ID   WP_014481052.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3748086..3759477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS20230 (QYC34_20230) flgL 3748258..3749154 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  QYC34_RS20235 (QYC34_20235) flgK 3749165..3750688 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  QYC34_RS20240 (QYC34_20240) flgN 3750707..3751189 (-) 483 WP_014481048.1 flagellar protein FlgN -
  QYC34_RS20245 (QYC34_20245) flgM 3751205..3751471 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  QYC34_RS20250 (QYC34_20250) yvyF 3751552..3751971 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  QYC34_RS20255 (QYC34_20255) comFC 3752044..3752766 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QYC34_RS20260 (QYC34_20260) comFB 3752730..3753026 (-) 297 WP_003227989.1 late competence protein ComFB -
  QYC34_RS20265 (QYC34_20265) comFA 3753086..3754477 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  QYC34_RS20270 (QYC34_20270) fakBA 3754584..3755429 (-) 846 WP_014481053.1 DegV family protein -
  QYC34_RS20275 (QYC34_20275) degU 3755527..3756216 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  QYC34_RS20280 (QYC34_20280) degS 3756299..3757456 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QYC34_RS20285 (QYC34_20285) - 3757673..3758326 (+) 654 WP_046160906.1 YigZ family protein -
  QYC34_RS20290 (QYC34_20290) - 3758326..3759318 (+) 993 WP_014481056.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52543.49 Da        Isoelectric Point: 9.7976

>NTDB_id=852369 QYC34_RS20265 WP_014481052.1 3753086..3754477(-) (comFA) [Bacillus subtilis strain SRCM126725]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=852369 QYC34_RS20265 WP_014481052.1 3753086..3754477(-) (comFA) [Bacillus subtilis strain SRCM126725]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.056

100

0.981