Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QYC34_RS20255 Genome accession   NZ_CP129338
Coordinates   3752044..3752766 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3747044..3757766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS20220 (QYC34_20220) fliW 3747184..3747615 (-) 432 WP_046160903.1 flagellar assembly protein FliW -
  QYC34_RS20225 (QYC34_20225) yviE 3747636..3748211 (-) 576 WP_046160904.1 DUF6470 family protein -
  QYC34_RS20230 (QYC34_20230) flgL 3748258..3749154 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  QYC34_RS20235 (QYC34_20235) flgK 3749165..3750688 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  QYC34_RS20240 (QYC34_20240) flgN 3750707..3751189 (-) 483 WP_014481048.1 flagellar protein FlgN -
  QYC34_RS20245 (QYC34_20245) flgM 3751205..3751471 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  QYC34_RS20250 (QYC34_20250) yvyF 3751552..3751971 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  QYC34_RS20255 (QYC34_20255) comFC 3752044..3752766 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QYC34_RS20260 (QYC34_20260) comFB 3752730..3753026 (-) 297 WP_003227989.1 late competence protein ComFB -
  QYC34_RS20265 (QYC34_20265) comFA 3753086..3754477 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  QYC34_RS20270 (QYC34_20270) fakBA 3754584..3755429 (-) 846 WP_014481053.1 DegV family protein -
  QYC34_RS20275 (QYC34_20275) degU 3755527..3756216 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  QYC34_RS20280 (QYC34_20280) degS 3756299..3757456 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=852368 QYC34_RS20255 WP_014481051.1 3752044..3752766(-) (comFC) [Bacillus subtilis strain SRCM126725]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=852368 QYC34_RS20255 WP_014481051.1 3752044..3752766(-) (comFC) [Bacillus subtilis strain SRCM126725]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992