Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QYC34_RS03540 Genome accession   NZ_CP129338
Coordinates   676489..677637 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis strain SRCM126725     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 671489..682637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS03520 (QYC34_03520) yclH 671860..672540 (-) 681 WP_015382762.1 ABC transporter ATP-binding protein -
  QYC34_RS03525 (QYC34_03525) yclI 672556..674022 (-) 1467 WP_046160054.1 ABC transporter permease -
  QYC34_RS03530 (QYC34_03530) yclJ 674235..674918 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  QYC34_RS03535 (QYC34_03535) yclK 674905..676326 (+) 1422 WP_153952928.1 two-component system sensor histidine kinase YclK -
  QYC34_RS03540 (QYC34_03540) rapC 676489..677637 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  QYC34_RS03545 (QYC34_03545) phrC 677621..677743 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  QYC34_RS03550 (QYC34_03550) yczM 677843..677932 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  QYC34_RS03555 (QYC34_03555) yczN 678014..678127 (-) 114 WP_032678937.1 YjcZ family sporulation protein -
  QYC34_RS03560 (QYC34_03560) thrD 678280..679644 (-) 1365 WP_032726529.1 aspartate kinase -
  QYC34_RS03565 (QYC34_03565) ceuB 680029..680979 (+) 951 WP_015382768.1 petrobactin ABC transporter permease YclN Machinery gene
  QYC34_RS03570 (QYC34_03570) yclO 680972..681919 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=852311 QYC34_RS03540 WP_014475800.1 676489..677637(+) (rapC) [Bacillus subtilis strain SRCM126725]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=852311 QYC34_RS03540 WP_014475800.1 676489..677637(+) (rapC) [Bacillus subtilis strain SRCM126725]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTACAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568