Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   QYR57_RS02610 Genome accession   NZ_CP129327
Coordinates   521937..522209 (-) Length   90 a.a.
NCBI ID   WP_367561886.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 4-21     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 516937..527209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR57_RS02590 (QYR57_02590) ileS 516991..519783 (+) 2793 WP_367561883.1 isoleucine--tRNA ligase -
  QYR57_RS02595 (QYR57_02595) - 519939..520241 (-) 303 WP_003101050.1 DUF1827 family protein -
  QYR57_RS02600 (QYR57_02600) - 520298..520744 (-) 447 WP_367561884.1 NUDIX hydrolase -
  QYR57_RS02605 (QYR57_02605) clpE 520871..521980 (-) 1110 WP_367561885.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  QYR57_RS02610 (QYR57_02610) clpE 521937..522209 (-) 273 WP_367561886.1 hypothetical protein Regulator
  QYR57_RS02615 (QYR57_02615) clpE 522115..522327 (-) 213 WP_367561887.1 hypothetical protein Regulator
  QYR57_RS02620 (QYR57_02620) clpE 522269..523129 (-) 861 WP_367561888.1 AAA family ATPase Regulator
  QYR57_RS02625 (QYR57_02625) - 523387..523617 (+) 231 WP_003101057.1 YkuJ family protein -
  QYR57_RS02630 (QYR57_02630) - 523735..524424 (+) 690 WP_367561889.1 amino acid ABC transporter permease -
  QYR57_RS02635 (QYR57_02635) - 524421..525155 (+) 735 WP_003101061.1 amino acid ABC transporter ATP-binding protein -
  QYR57_RS02640 (QYR57_02640) - 525231..526088 (+) 858 WP_367561890.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 90 a.a.        Molecular weight: 10436.07 Da        Isoelectric Point: 8.4728

>NTDB_id=852206 QYR57_RS02610 WP_367561886.1 521937..522209(-) (clpE) [Streptococcus iniae strain Si 4-21]
MKATIMLSIAKMLLKPQTHLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDKRLLEAENLKTQATRNEDYERA
SILPRSNYQV

Nucleotide


Download         Length: 273 bp        

>NTDB_id=852206 QYR57_RS02610 WP_367561886.1 521937..522209(-) (clpE) [Streptococcus iniae strain Si 4-21]
ATGAAAGCTACCATCATGTTAAGTATAGCCAAGATGCTATTGAAGCCGCAGACTCATTTATCAAATCGTTACATCCAAGA
TCGTTTCTTACCTGACAAGGCTATTGATCTTCTTGATGAGGCGGGATCTAAAATGAACTTAACACTCAATTTTGTTGACC
CTAAAGAAATTGATAAACGCTTGCTTGAAGCTGAAAATCTAAAAACTCAAGCAACGCGTAATGAGGATTATGAACGCGCA
AGCATACTTCCGCGATCAAATTACCAAGTATAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(8-82)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

82.353

75.556

0.622
  clpE Streptococcus pneumoniae Rx1

87.097

68.889

0.6
  clpE Streptococcus pneumoniae D39

87.097

68.889

0.6
  clpE Streptococcus pneumoniae R6

87.097

68.889

0.6
  clpE Streptococcus pneumoniae TIGR4

87.097

68.889

0.6
  clpC Lactococcus lactis subsp. cremoris KW2

66.176

75.556

0.5
  clpC Bacillus subtilis subsp. subtilis str. 168

45

88.889

0.4