Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   QYR57_RS02605 Genome accession   NZ_CP129327
Coordinates   520871..521980 (-) Length   369 a.a.
NCBI ID   WP_367561885.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 4-21     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 515871..526980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR57_RS02585 (QYR57_02585) - 515975..516736 (+) 762 WP_003101047.1 DivIVA domain-containing protein -
  QYR57_RS02590 (QYR57_02590) ileS 516991..519783 (+) 2793 WP_367561883.1 isoleucine--tRNA ligase -
  QYR57_RS02595 (QYR57_02595) - 519939..520241 (-) 303 WP_003101050.1 DUF1827 family protein -
  QYR57_RS02600 (QYR57_02600) - 520298..520744 (-) 447 WP_367561884.1 NUDIX hydrolase -
  QYR57_RS02605 (QYR57_02605) clpE 520871..521980 (-) 1110 WP_367561885.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  QYR57_RS02610 (QYR57_02610) clpE 521937..522209 (-) 273 WP_367561886.1 hypothetical protein Regulator
  QYR57_RS02615 (QYR57_02615) clpE 522115..522327 (-) 213 WP_367561887.1 hypothetical protein Regulator
  QYR57_RS02620 (QYR57_02620) clpE 522269..523129 (-) 861 WP_367561888.1 AAA family ATPase Regulator
  QYR57_RS02625 (QYR57_02625) - 523387..523617 (+) 231 WP_003101057.1 YkuJ family protein -
  QYR57_RS02630 (QYR57_02630) - 523735..524424 (+) 690 WP_367561889.1 amino acid ABC transporter permease -
  QYR57_RS02635 (QYR57_02635) - 524421..525155 (+) 735 WP_003101061.1 amino acid ABC transporter ATP-binding protein -
  QYR57_RS02640 (QYR57_02640) - 525231..526088 (+) 858 WP_367561890.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41474.25 Da        Isoelectric Point: 5.6768

>NTDB_id=852205 QYR57_RS02605 WP_367561885.1 520871..521980(-) (clpE) [Streptococcus iniae strain Si 4-21]
MNAQAYFRDQITKYKEMQKQKLDDQDIPIITEKTIEAIVEQKTNIPVGDLKEKEQSQLVHLADDLKKHVIGQDEAVTKIA
KAIRRNRVGLGDPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADNMIRFDMSEYMEKHAVSKLVGAPPGYVGYDEAGQ
LTEKVRRNPYSLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKVEASVGFGATREGRSQS
VLGQLGNFFSPEFMNRFDGIIEFQALSKDNLLHIVDLMLDDINQRLEHNGLHLEVTQKVKEKLVDLGYDPKMGARPLRRT
LQEHIEDAITDFYLENPSEKDLRAIMTSNGQIVIKSNKKNEVTSYETPQ

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=852205 QYR57_RS02605 WP_367561885.1 520871..521980(-) (clpE) [Streptococcus iniae strain Si 4-21]
ATGAACGCGCAAGCATACTTCCGCGATCAAATTACCAAGTATAAAGAAATGCAAAAGCAAAAATTGGATGATCAGGATAT
TCCTATTATTACCGAGAAAACCATTGAAGCAATTGTTGAGCAAAAAACCAATATTCCTGTTGGCGATTTGAAAGAAAAAG
AGCAATCTCAATTGGTTCATTTGGCAGATGATTTGAAAAAACATGTTATTGGTCAAGATGAGGCTGTCACAAAGATTGCT
AAAGCTATTCGCCGCAACAGAGTGGGACTAGGCGACCCTAATCGACCAATTGGCTCCTTCCTTTTTGTTGGACCTACCGG
TGTTGGGAAAACAGAATTGTCTAAACAATTAGCTATTGAACTTTTCGGTTCTGCTGATAATATGATTCGATTTGACATGT
CAGAATATATGGAAAAACACGCAGTATCAAAACTTGTCGGTGCTCCTCCAGGATATGTTGGTTATGATGAAGCAGGTCAA
TTAACAGAAAAAGTTCGTCGTAACCCATACTCTCTTATCCTTTTAGATGAGGTTGAAAAAGCACATCCAGATGTTATGCA
TATGTTCCTTCAAGTGTTAGATGATGGACGTTTAACAGATGGACAAGGCCGCACTGTCAGTTTCAAAGACACTATCATTA
TCATGACATCAAACGCAGGAACTGGTAAAGTCGAAGCCTCTGTTGGATTTGGTGCTACTCGTGAGGGGCGTTCACAGTCT
GTTTTAGGTCAACTCGGGAACTTCTTTAGCCCTGAATTCATGAACCGTTTTGATGGTATCATTGAATTCCAAGCACTTAG
CAAGGATAATCTCTTACATATTGTTGATTTGATGTTAGATGATATTAATCAAAGACTTGAACACAACGGCCTTCATTTAG
AGGTGACTCAAAAAGTAAAAGAAAAATTAGTTGATTTAGGCTATGATCCTAAAATGGGAGCTCGGCCATTGCGTCGTACC
CTACAAGAACACATTGAAGATGCTATCACTGATTTTTACTTGGAAAATCCAAGCGAAAAAGATTTACGCGCCATCATGAC
AAGTAATGGTCAGATTGTCATTAAATCAAATAAAAAGAATGAAGTGACAAGTTACGAAACACCACAATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(95-258)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(266-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae R6

85.912

98.103

0.843
  clpE Streptococcus pneumoniae Rx1

85.912

98.103

0.843
  clpE Streptococcus pneumoniae D39

85.912

98.103

0.843
  clpE Streptococcus mutans UA159

85.675

98.374

0.843
  clpE Streptococcus pneumoniae TIGR4

85.635

98.103

0.84
  clpC Lactococcus lactis subsp. cremoris KW2

75.956

99.187

0.753
  clpC Bacillus subtilis subsp. subtilis str. 168

47.956

99.458

0.477
  clpC Streptococcus pneumoniae D39

47.006

90.515

0.425
  clpC Streptococcus pneumoniae Rx1

47.006

90.515

0.425
  clpC Streptococcus pneumoniae TIGR4

47.006

90.515

0.425
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.567

90.786

0.423
  clpC Streptococcus thermophilus LMD-9

46.224

89.702

0.415
  clpC Streptococcus thermophilus LMG 18311

46.224

89.702

0.415
  clpC Streptococcus mutans UA159

49.038

84.553

0.415