Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   QYR57_RS01940 Genome accession   NZ_CP129327
Coordinates   376406..377905 (+) Length   499 a.a.
NCBI ID   WP_003100862.1    Uniprot ID   A0A3L8GP27
Organism   Streptococcus iniae strain Si 4-21     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 371406..382905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR57_RS01925 (QYR57_01925) pbp3 371529..372737 (-) 1209 WP_367561837.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  QYR57_RS01930 (QYR57_01930) pbp3 372806..374044 (-) 1239 WP_367561838.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  QYR57_RS01935 (QYR57_01935) - 374361..376341 (+) 1981 Protein_359 peptide ABC transporter substrate-binding protein -
  QYR57_RS01940 (QYR57_01940) amiC 376406..377905 (+) 1500 WP_003100862.1 ABC transporter permease Regulator
  QYR57_RS01945 (QYR57_01945) amiD 377905..378831 (+) 927 WP_003100863.1 oligopeptide ABC transporter permease OppC Regulator
  QYR57_RS01950 (QYR57_01950) amiE 378840..379907 (+) 1068 WP_003100864.1 ABC transporter ATP-binding protein Regulator
  QYR57_RS01955 (QYR57_01955) amiF 379900..380823 (+) 924 WP_367561839.1 ATP-binding cassette domain-containing protein Regulator
  QYR57_RS01960 (QYR57_01960) - 381288..382455 (-) 1168 Protein_364 IS30-like element ISSag9 family transposase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56076.58 Da        Isoelectric Point: 10.2606

>NTDB_id=852201 QYR57_RS01940 WP_003100862.1 376406..377905(+) (amiC) [Streptococcus iniae strain Si 4-21]
MKKYIVERLFRSLISILLVTTLTYVIVFTLVPSNLIFRQDPNYNKMVTTPDKKDNYRNSVFERMGYISYYNSKELEIKAE
KIDSSVTVEPTKKNETIYKKYIASLGRGWQLKQFKESKRFYATRQIPIYERVWNFFTRLVVIDHPWKIKDSKNPNLERYV
RPEMDPAVGPALVGSGTKHKYLIYFNGQFPFVHQNIVKFDLGTSYPTYANIPVIQVITQGQGRSLSKEVKFPTGVTKSSP
IDIYSRTYKSPRLMDARDRANFGKDDAYSATRNNHAEPSMISNSFKIGIAGVLLSYLFGLPIGMLMSYYKDGLFDRFSTA
TTTFMLALPSIALVYIVRFIGSSVGLPDTFPLLGAGDPRSYVLPALILGILGTPGTVVWFRRYLVDLQGSDFVRFARAKG
LTEAEISKHHLFKQAMVPIVNGIPQAIVSTIAGATLTETVFAFPGMGKMLIDAIKVANNSMVVGLVFIFAVLSIIALLVG
DLLMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=852201 QYR57_RS01940 WP_003100862.1 376406..377905(+) (amiC) [Streptococcus iniae strain Si 4-21]
ATGAAAAAGTACATTGTTGAACGCCTGTTTAGGTCTTTGATATCAATTTTATTGGTAACGACATTGACTTATGTTATTGT
TTTTACCTTAGTACCATCTAATCTGATTTTCAGGCAAGACCCGAACTATAACAAAATGGTGACCACACCAGATAAAAAAG
ATAATTATCGCAATTCAGTTTTTGAGCGTATGGGTTATATTTCTTACTATAATAGTAAAGAACTTGAAATCAAAGCTGAA
AAAATAGATAGCAGTGTAACTGTTGAGCCAACTAAAAAGAATGAAACTATTTATAAAAAATACATTGCATCCTTAGGACG
TGGTTGGCAGTTGAAGCAGTTTAAAGAAAGCAAGCGTTTCTACGCAACGCGTCAAATTCCAATTTATGAACGTGTTTGGA
ATTTCTTTACTCGCTTAGTTGTTATCGATCATCCTTGGAAGATTAAGGATTCTAAAAATCCAAACTTAGAACGTTACGTA
CGTCCAGAAATGGATCCAGCTGTAGGACCTGCTTTAGTAGGTTCGGGAACAAAGCACAAATATCTGATTTATTTCAATGG
CCAGTTCCCATTTGTTCATCAAAATATAGTTAAATTTGATTTAGGAACATCATACCCAACTTATGCTAATATTCCTGTTA
TTCAGGTCATCACGCAAGGGCAAGGGCGTAGCCTGTCTAAAGAGGTTAAATTCCCAACAGGTGTAACAAAATCCTCACCA
ATTGACATTTACTCAAGAACTTATAAATCTCCAAGATTAATGGATGCTCGTGACCGCGCAAACTTTGGTAAAGACGATGC
TTACTCAGCAACACGCAATAACCATGCGGAGCCATCAATGATTTCTAATTCCTTTAAGATTGGTATAGCAGGTGTATTAC
TGTCATATTTATTTGGATTACCAATTGGAATGTTGATGTCTTATTATAAAGATGGTTTATTTGATCGTTTTTCTACAGCA
ACAACAACGTTTATGTTAGCTTTACCAAGTATTGCACTTGTCTATATTGTTCGTTTTATAGGTTCTAGTGTAGGATTGCC
TGATACCTTCCCATTGCTAGGTGCAGGAGATCCAAGGTCTTATGTATTACCGGCATTGATTCTAGGTATTTTAGGGACAC
CTGGAACGGTTGTGTGGTTCCGTCGTTATTTGGTTGACTTGCAAGGTAGTGATTTTGTTCGTTTTGCGCGTGCTAAAGGA
CTTACAGAGGCTGAAATTTCAAAACACCACTTGTTCAAACAAGCAATGGTGCCAATTGTTAATGGTATCCCACAAGCAAT
TGTCTCAACTATTGCTGGTGCAACCTTAACAGAAACAGTATTTGCTTTCCCAGGTATGGGGAAAATGCTTATTGATGCGA
TTAAAGTAGCCAATAACTCAATGGTCGTTGGATTAGTCTTCATTTTTGCCGTGCTTTCAATTATTGCATTGTTGGTTGGC
GATTTGCTTATGACTATTTTGGACCCACGTATTAAATTATCAAGTAAAGGAGGGAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GP27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.725

100

0.627
  amiC Streptococcus thermophilus LMD-9

62.325

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621