Detailed information NTG0852204

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: QYR57_RS01955
• Genome accession: NZ_CP129327
• Coordinates: 379900..380823 (+)
• Length: 307 a.a.
• NCBI ID: WP_367561839.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain Si 4-21
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	381288..382091	379900..380823	flank	465

Gene organization within MGE regions

Location: 379900..382091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR57_RS01955 (QYR57_01955)	amiF	379900..380823 (+)	924	WP_367561839.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34699.89 Da
• Isoelectric Point: 5.9503

>NTDB_id=852204 QYR57_RS01955 WP_367561839.1 379900..380823(+) (amiF) [Streptococcus iniae strain Si 4-21]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIVYDGKVINGKKSKS
EANELIRKIQMIFQDPATSLNERATVDYIISEGLYNFNLFKNEAERQEKIKNMMTEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKKMQKEKNLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPIHPYTKSLLSAVPIPDPILERQKKLVVYSVDQHDYSVDEPEMVEIKPGHFVWANKTEVEEYKRDL

Nucleotide

• Length: 924 bp

>NTDB_id=852204 QYR57_RS01955 WP_367561839.1 379900..380823(+) (amiF) [Streptococcus iniae strain Si 4-21]
ATGTCTGAGAAATTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTTGCTGTTAAAAA
TGCAAACTTCTTTATTAATAAAGGAGAAACGTTCTCTCTTGTTGGAGAATCAGGAAGTGGAAAAACCACCATTGGACGTG
CTATCATTGGCTTAAATGATACTAGTTCTGGTGAAATTGTCTATGATGGCAAGGTTATTAATGGTAAAAAAAGCAAATCA
GAAGCTAATGAATTAATTCGAAAAATTCAAATGATTTTCCAAGATCCAGCGACAAGTTTGAATGAACGTGCTACGGTTGA
CTATATTATTTCTGAAGGTCTTTATAACTTTAATCTCTTCAAAAATGAAGCAGAGCGTCAAGAAAAGATTAAAAATATGA
TGACAGAAGTGGGATTACTGGCAGAACATTTGACACGTTATCCCCATGAATTTTCTGGAGGTCAACGTCAACGTATTGGA
ATTGCACGGGCTTTGGTCATGGATCCAGAATTTATTATTGCTGATGAGCCAATTTCTGCATTGGATGTTTCTGTACGAGC
TCAAGTTTTAAATTTGCTTAAAAAAATGCAAAAAGAGAAGAACTTGACCTATCTTTTTATTGCTCATGATTTATCAGTTG
TTCGTTTCATCTCGGATCGGATTGCTGTTATCCATAAAGGGGTTATTGTTGAGGTTGCTGAAACAGAAGAACTTTTCATT
AATCCAATCCATCCATACACCAAATCACTCCTATCTGCGGTCCCAATTCCAGATCCAATTTTGGAAAGACAAAAGAAATT
AGTGGTTTACAGTGTTGATCAACACGATTATTCCGTCGATGAACCTGAAATGGTTGAAATCAAACCAGGGCACTTTGTTT
GGGCAAATAAAACTGAAGTAGAAGAATACAAAAGAGACTTATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	82.353	99.674	0.821
amiF	Streptococcus thermophilus LMD-9	82.026	99.674	0.818
amiF	Streptococcus salivarius strain HSISS4	81.373	99.674	0.811