Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QWI19_RS16180 Genome accession   NZ_CP129123
Coordinates   3097516..3098160 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain 6D1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3092516..3103160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS16145 mrpB 3093706..3094137 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  QWI19_RS16150 mrpC 3094137..3094478 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QWI19_RS16155 mrpD 3094471..3095952 (+) 1482 WP_044052469.1 Na+/H+ antiporter subunit D -
  QWI19_RS16160 mrpE 3095958..3096434 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QWI19_RS16165 mrpF 3096434..3096718 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QWI19_RS16170 mnhG 3096702..3097076 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  QWI19_RS16175 yuxO 3097117..3097497 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  QWI19_RS16180 comA 3097516..3098160 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QWI19_RS16185 comP 3098241..3100550 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  QWI19_RS16190 comX 3100565..3100732 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  QWI19_RS16195 comQ 3100720..3101619 (-) 900 WP_015251332.1 ComX modifying isoprenyl transferase ComQ Regulator
  QWI19_RS16200 degQ 3101804..3101944 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QWI19_RS16205 - 3102166..3102291 (+) 126 WP_003228793.1 hypothetical protein -
  QWI19_RS16210 - 3102405..3102773 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=851228 QWI19_RS16180 WP_003220716.1 3097516..3098160(-) (comA) [Bacillus subtilis strain 6D1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=851228 QWI19_RS16180 WP_003220716.1 3097516..3098160(-) (comA) [Bacillus subtilis strain 6D1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGTGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1