Detailed information NTG0850368

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QU606_RS12070
• Genome accession: NZ_CP128996
• Coordinates: 2650046..2650912 (+)
• Length: 288 a.a.
• NCBI ID: WP_069075202.1
• Uniprot ID: A0AB36Y547
• Organism: Pseudomonas sp. OVF7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2645046..2655912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU606_RS12040 (QU606_12040)	nadC	2645244..2646092 (+)	849	WP_024073388.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QU606_RS12045 (QU606_12045)	-	2646214..2646519 (-)	306	WP_024073387.1	DUF6388 family protein	-
QU606_RS12055 (QU606_12055)	-	2646782..2648191 (-)	1410	WP_304998420.1	O-antigen ligase	-
QU606_RS12060 (QU606_12060)	-	2648226..2648639 (-)	414	WP_024073385.1	pilin	-
QU606_RS12065 (QU606_12065)	pilC	2648841..2650049 (+)	1209	WP_193690171.1	type II secretion system F family protein	Machinery gene
QU606_RS12070 (QU606_12070)	pilD	2650046..2650912 (+)	867	WP_069075202.1	A24 family peptidase	Machinery gene
QU606_RS12075 (QU606_12075)	coaE	2650909..2651532 (+)	624	WP_024073382.1	dephospho-CoA kinase	-
QU606_RS12080 (QU606_12080)	yacG	2651529..2651729 (+)	201	WP_017845472.1	DNA gyrase inhibitor YacG	-
QU606_RS12085 (QU606_12085)	-	2651726..2651941 (-)	216	WP_003171680.1	hypothetical protein	-
QU606_RS12090 (QU606_12090)	-	2652018..2652707 (-)	690	WP_024073381.1	energy-coupling factor ABC transporter permease	-
QU606_RS12095 (QU606_12095)	-	2652704..2653171 (-)	468	WP_069075203.1	FAD/FMN-containing dehydrogenase	-
QU606_RS12100 (QU606_12100)	-	2653272..2653901 (+)	630	WP_017845475.1	DUF1780 domain-containing protein	-
QU606_RS12105 (QU606_12105)	-	2653991..2654164 (+)	174	WP_024073379.1	DUF3094 family protein	-
QU606_RS12110 (QU606_12110)	-	2654225..2655523 (+)	1299	WP_017845476.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31860.16 Da
• Isoelectric Point: 7.0716

>NTDB_id=850368 QU606_RS12070 WP_069075202.1 2650046..2650912(+) (pilD) [Pseudomonas sp. OVF7]
MNLLLTEQPWAFVAVALVLGLIIGSFLNVLVWRLPKMLEREWRAQALEVLGMPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLMLRGRCAHCQQPISARYPITELACGLISAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDILVLP
LLWLGLIINSADLLTALPDALWGAVIGYLSLWTVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVI
VGLILMRLRKAEISAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=850368 QU606_RS12070 WP_069075202.1 2650046..2650912(+) (pilD) [Pseudomonas sp. OVF7]
TTGAACCTGCTGCTGACTGAGCAGCCATGGGCGTTTGTCGCAGTGGCCCTGGTACTGGGGCTGATCATCGGTAGCTTCCT
CAATGTACTGGTATGGCGCCTGCCGAAAATGCTTGAGCGGGAATGGCGCGCACAAGCCCTTGAAGTGCTCGGCATGCCCG
CCGACCCCGCCGGGCCCACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAATCACCCGATTCGCCCGTGG
GAGAATATCCCGCTGCTCAGCTACCTCATGCTCCGGGGGCGTTGCGCCCATTGTCAGCAGCCGATCAGTGCACGCTACCC
CATCACTGAACTGGCCTGCGGGCTGATCTCGGCCATGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCCGGGGCAGTCA
TGTTGTTGAGCTGGGGGCTGCTGGCAATGAGCCTGATCGATGTGGATCACCAACTGCTACCCGATATCCTGGTCCTGCCG
CTGCTGTGGCTGGGGCTGATCATCAACAGCGCCGACCTGCTGACCGCACTGCCGGACGCACTGTGGGGCGCGGTGATCGG
CTACCTAAGTCTGTGGACAGTGTTCTGGCTGTTCAAACTGGTGACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGT
TATTGGCGCTGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTACTGATGTCTTCGCTGGTGGGCGTGATC
GTAGGGCTGATTCTGATGCGCTTGCGCAAGGCTGAGATCTCGGCACCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.317	96.528	0.524
pilD	Vibrio campbellii strain DS40M4	51.254	96.875	0.497
pilD	Acinetobacter nosocomialis M2	51.282	94.792	0.486
pilD	Acinetobacter baumannii D1279779	51.282	94.792	0.486
pilD	Neisseria gonorrhoeae MS11	49.259	93.75	0.462