Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QSV47_RS00055 Genome accession   NZ_CP128865
Coordinates   13100..13597 (+) Length   165 a.a.
NCBI ID   WP_034533769.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8100..18597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV47_RS00040 (QSV47_00040) - 10111..11400 (+) 1290 WP_217304371.1 MFS transporter -
  QSV47_RS00045 (QSV47_00045) - 11493..12581 (+) 1089 WP_094750779.1 hypothetical protein -
  QSV47_RS00050 (QSV47_00050) rpsF 12765..13055 (+) 291 WP_034533768.1 30S ribosomal protein S6 -
  QSV47_RS00055 (QSV47_00055) ssb 13100..13597 (+) 498 WP_034533769.1 single-stranded DNA-binding protein Machinery gene
  QSV47_RS00060 (QSV47_00060) rpsR 13626..13862 (+) 237 WP_034530639.1 30S ribosomal protein S18 -
  QSV47_RS00065 (QSV47_00065) - 14025..16061 (+) 2037 WP_080997860.1 DHH family phosphoesterase -
  QSV47_RS00070 (QSV47_00070) rplI 16129..16581 (+) 453 WP_034530642.1 50S ribosomal protein L9 -
  QSV47_RS00075 (QSV47_00075) dnaB 16607..17995 (+) 1389 WP_034530644.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17987.33 Da        Isoelectric Point: 4.4398

>NTDB_id=849744 QSV47_RS00055 WP_034533769.1 13100..13597(+) (ssb) [Apilactobacillus kunkeei strain S1]
MINRTTLTGRLTRDVDLRYTPSGSAVGNFTLAVDRSFTNQQGEREADFINCVIWRKSAENFANFTHKGALVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSSNQGNNNAGNNAPQANAGNNNPFDSSNNAPSNNGGNNSADPFANSGDQIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=849744 QSV47_RS00055 WP_034533769.1 13100..13597(+) (ssb) [Apilactobacillus kunkeei strain S1]
ATGATTAATCGTACAACTTTAACTGGTAGATTAACACGGGATGTTGATTTGCGATACACTCCAAGCGGTTCAGCCGTAGG
TAACTTCACTTTAGCTGTTGATCGTAGTTTTACCAACCAACAAGGTGAAAGAGAAGCAGATTTTATCAACTGTGTTATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCACCCATAAGGGTGCTTTGGTTGGTATTGATGGACGTATTCAAACAAGA
AATTACGAAAATCAACAAGGCCAAAGAGTATATGTTACTGAAGTAGTTGTAGAAAACTTTGCATTACTAGAACCTCGTTC
AAGTAACCAAGGTAACAACAACGCCGGCAACAATGCTCCTCAAGCAAATGCAGGAAATAACAATCCATTTGATTCATCAA
ACAATGCCCCATCAAATAATGGTGGCAATAACTCAGCGGATCCATTCGCTAACTCTGGTGATCAAATTGATATTTCCGAT
GATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.442

100

0.703
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.618
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.242

0.364