Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QU579_RS10625 Genome accession   NZ_CP128803
Coordinates   2329937..2332195 (-) Length   752 a.a.
NCBI ID   WP_029857374.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2310270..2334873 2329937..2332195 within 0


Gene organization within MGE regions


Location: 2310270..2334873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS10550 (QU579_10790) - 2310270..2311040 (-) 771 WP_005456207.1 ABC transporter ATP-binding protein -
  QU579_RS10555 (QU579_10795) - 2311283..2312749 (-) 1467 WP_005456213.1 hypothetical protein -
  QU579_RS10560 (QU579_10800) - 2313206..2314753 (+) 1548 WP_005456280.1 DUF3360 family protein -
  QU579_RS10565 (QU579_10805) pflB 2315060..2317336 (+) 2277 WP_005456189.1 formate C-acetyltransferase -
  QU579_RS10570 (QU579_10810) - 2317489..2318466 (+) 978 WP_005481800.1 lipid A deacylase LpxR family protein -
  QU579_RS10575 (QU579_10815) pflA 2318613..2319353 (+) 741 WP_005456250.1 pyruvate formate lyase 1-activating protein -
  QU579_RS10580 (QU579_10820) - 2319514..2320182 (+) 669 WP_020904025.1 energy-coupling factor ABC transporter permease -
  QU579_RS10585 (QU579_10825) - 2320337..2320837 (+) 501 WP_342821062.1 YfbU family protein -
  QU579_RS10590 (QU579_10830) - 2321327..2323261 (+) 1935 WP_005456210.1 PrkA family serine protein kinase -
  QU579_RS10595 (QU579_10835) - 2323309..2324580 (+) 1272 WP_029857377.1 YeaH/YhbH family protein -
  QU579_RS10600 (QU579_10840) - 2324592..2326151 (+) 1560 WP_406717518.1 SpoVR family protein -
  QU579_RS10605 (QU579_10845) kdsB 2326229..2326984 (-) 756 WP_005456221.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QU579_RS10610 (QU579_10850) - 2326984..2327163 (-) 180 WP_005378451.1 Trm112 family protein -
  QU579_RS10615 (QU579_10855) lpxK 2327144..2328151 (-) 1008 WP_029857375.1 tetraacyldisaccharide 4'-kinase -
  QU579_RS10620 (QU579_10860) msbA 2328157..2329905 (-) 1749 WP_015296464.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QU579_RS10625 (QU579_10865) comEC 2329937..2332195 (-) 2259 WP_029857374.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QU579_RS10630 (QU579_10870) - 2332204..2332713 (+) 510 WP_005456245.1 DUF2062 domain-containing protein -
  QU579_RS10635 (QU579_10875) lolE 2332919..2334163 (-) 1245 WP_025533743.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  QU579_RS10640 (QU579_10880) lolD 2334166..2334873 (-) 708 WP_005456257.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84812.37 Da        Isoelectric Point: 9.5004

>NTDB_id=849654 QU579_RS10625 WP_029857374.1 2329937..2332195(-) (comEC) [Vibrio parahaemolyticus strain NJIFDCVp52]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVIAIKQVNSHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSHWVIRTSSSWREAIIQTVERDIFRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYLALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKESRLGKLRILLLTQLILSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWYLLDVFLVPLSWSVRYAIGTWQPISAEWTFVIAVVSVVLVLRHVMPRYVWMFVC
VIVVMTGLFPKQYNQTWHIDVLDVGHGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAAEKWKWQGLNMEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKTSSNPKFINVVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=849654 QU579_RS10625 WP_029857374.1 2329937..2332195(-) (comEC) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTTCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCATAGCGATAAAACA
AGTGAATTCTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAGTCAATG
GGAAGTGGTGTTGTTGCTAGAGCGGTCGTAACTAAAGATTCACACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAAGC
TATTATTCAAACTGTTGAGCGTGATATTTTTCGCCTTGAGCATTTTGCTCTAATTAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGACTACTGCATCTTGTATCAATTTCTGGTCTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTGCCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATCTTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTACTGTTATTGGCTGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
TACAGTGCAAGACTCGAAGGAAAGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATATTGAGCTTATTGA
TTGTCCCGATCAGTGGCTATTTTTTCTCCGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATCGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTA
TTTGCTTGACGTATTCCTTGTGCCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTGCCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGTCGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACCGGATTGTTTCCTAAGCAATATAACCAAACTTGGCATATTGATGTACTTGATGTCGGGCATGG
GTTGGCGGTACTGGTTGAAAAAGAGGGGAGAGTTTTACTCTATGATACGGGCAAGGCTTGGCAAAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCACCGCAGAGGTTACTCAAGTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAGCAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAACCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGTTAGTGCCGCATCATGGAAGCAA
AACCTCTTCTAACCCTAAGTTTATCAATGTTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGAGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.67

100

0.987
  comEC Vibrio campbellii strain DS40M4

66.755

100

0.668
  comEC Vibrio cholerae strain A1552

41.083

100

0.414