Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QU579_RS01960 Genome accession   NZ_CP128803
Coordinates   419205..419849 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 414205..424849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS01950 (QU579_01955) uvrA 415115..417937 (-) 2823 WP_025547407.1 excinuclease ABC subunit UvrA -
  QU579_RS01955 (QU579_01960) galU 418075..418947 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QU579_RS01960 (QU579_01965) qstR 419205..419849 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  QU579_RS01965 (QU579_01970) ssb 420128..420658 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  QU579_RS01970 (QU579_01975) csrD 420899..422908 (+) 2010 WP_029837280.1 RNase E specificity factor CsrD -
  QU579_RS01975 (QU579_01980) - 422920..424361 (+) 1442 Protein_333 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=849633 QU579_RS01960 WP_005480993.1 419205..419849(-) (qstR) [Vibrio parahaemolyticus strain NJIFDCVp52]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=849633 QU579_RS01960 WP_005480993.1 419205..419849(-) (qstR) [Vibrio parahaemolyticus strain NJIFDCVp52]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGCCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523