Detailed information NTG0084890

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KI242_RS27020
• Genome accession: NZ_AP024342
• Coordinates: 5966549..5967883 (+)
• Length: 444 a.a.
• NCBI ID: WP_212805697.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Eqa60
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5961549..5972883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI242_RS27000 (PEQA60_53850)	pgeF	5962905..5963630 (-)	726	WP_015637079.1	peptidoglycan editing factor PgeF	-
KI242_RS27005 (PEQA60_53860)	rluD	5963627..5964589 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KI242_RS27010 (PEQA60_53870)	-	5964740..5965765 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
KI242_RS27015 (PEQA60_53880)	-	5965890..5966123 (+)	234	WP_015637081.1	PP0621 family protein	-
KI242_RS27020 (PEQA60_53890)	pilR	5966549..5967883 (+)	1335	WP_212805697.1	sigma-54 dependent transcriptional regulator	Regulator
KI242_RS27025 (PEQA60_53900)	thiO	5967880..5968980 (-)	1101	WP_212805698.1	glycine oxidase ThiO	-
KI242_RS27030 (PEQA60_53910)	-	5969034..5969435 (-)	402	WP_015637084.1	type IV pilin protein	-
KI242_RS27035 (PEQA60_53920)	-	5969451..5972513 (-)	3063	WP_212805699.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49303.51 Da
• Isoelectric Point: 8.6814

>NTDB_id=84890 KI242_RS27020 WP_212805697.1 5966549..5967883(+) (pilR) [Pseudomonas sp. Eqa60]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCRGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=84890 KI242_RS27020 WP_212805697.1 5966549..5967883(+) (pilR) [Pseudomonas sp. Eqa60]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGATGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAGAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCTGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.98	99.775	0.628
pilR	Acinetobacter baumannii strain A118	45.316	100	0.468
luxO	Vibrio cholerae strain A1552	37.097	97.748	0.363