Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QTN52_RS18000 Genome accession   NZ_CP128551
Coordinates   3595066..3595755 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM123441     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3590066..3600755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN52_RS17965 (QTN52_17965) - 3590264..3590746 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QTN52_RS17970 (QTN52_17970) flgM 3590761..3591027 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QTN52_RS17975 (QTN52_17975) - 3591097..3591516 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  QTN52_RS17980 (QTN52_17980) comFC 3591590..3592279 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  QTN52_RS17985 (QTN52_17985) - 3592285..3592569 (-) 285 WP_017418816.1 competence protein ComFB -
  QTN52_RS17990 (QTN52_17990) comFA 3592627..3594012 (-) 1386 WP_134986672.1 DEAD/DEAH box helicase Machinery gene
  QTN52_RS17995 (QTN52_17995) - 3594120..3594968 (-) 849 WP_015418336.1 DegV family protein -
  QTN52_RS18000 (QTN52_18000) degU 3595066..3595755 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN52_RS18005 (QTN52_18005) degS 3595832..3596995 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  QTN52_RS18010 (QTN52_18010) - 3597218..3597865 (+) 648 WP_007614107.1 YigZ family protein -
  QTN52_RS18015 (QTN52_18015) - 3597870..3599063 (+) 1194 WP_017418814.1 LCP family protein -
  QTN52_RS18020 (QTN52_18020) - 3599163..3600239 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=848881 QTN52_RS18000 WP_003219701.1 3595066..3595755(-) (degU) [Bacillus velezensis strain SRCM123441]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=848881 QTN52_RS18000 WP_003219701.1 3595066..3595755(-) (degU) [Bacillus velezensis strain SRCM123441]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1