Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QTN52_RS17990 Genome accession   NZ_CP128551
Coordinates   3592627..3594012 (-) Length   461 a.a.
NCBI ID   WP_134986672.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123441     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3587627..3599012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN52_RS17955 (QTN52_17955) flgL 3587802..3588719 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  QTN52_RS17960 (QTN52_17960) flgK 3588731..3590248 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  QTN52_RS17965 (QTN52_17965) - 3590264..3590746 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QTN52_RS17970 (QTN52_17970) flgM 3590761..3591027 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QTN52_RS17975 (QTN52_17975) - 3591097..3591516 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  QTN52_RS17980 (QTN52_17980) comFC 3591590..3592279 (-) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  QTN52_RS17985 (QTN52_17985) - 3592285..3592569 (-) 285 WP_017418816.1 competence protein ComFB -
  QTN52_RS17990 (QTN52_17990) comFA 3592627..3594012 (-) 1386 WP_134986672.1 DEAD/DEAH box helicase Machinery gene
  QTN52_RS17995 (QTN52_17995) - 3594120..3594968 (-) 849 WP_015418336.1 DegV family protein -
  QTN52_RS18000 (QTN52_18000) degU 3595066..3595755 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN52_RS18005 (QTN52_18005) degS 3595832..3596995 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  QTN52_RS18010 (QTN52_18010) - 3597218..3597865 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52583.00 Da        Isoelectric Point: 10.2370

>NTDB_id=848880 QTN52_RS17990 WP_134986672.1 3592627..3594012(-) (comFA) [Bacillus velezensis strain SRCM123441]
MSEGDSEFSEVRDFFYGRRLLRSEIPFSDQRIKRLTEKEYITAVPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=848880 QTN52_RS17990 WP_134986672.1 3592627..3594012(-) (comFA) [Bacillus velezensis strain SRCM123441]
ATGTCCGAAGGTGATTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCGTTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTAACAGAAAAAGAATATATAACGGCCGTGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618