Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   V5G02_RS02695 Genome accession   NZ_CP145026
Coordinates   523892..524365 (+) Length   157 a.a.
NCBI ID   WP_170959666.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S2_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518892..529365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G02_RS02670 (V5G02_02670) dnaB 519349..520755 (+) 1407 WP_047923824.1 replicative DNA helicase -
  V5G02_RS02675 (V5G02_02675) pilH 521063..521725 (+) 663 WP_263328822.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G02_RS02680 (V5G02_02680) pilV/pilI 521757..522362 (+) 606 WP_353074677.1 type IV pilus modification protein PilV Regulator
  V5G02_RS02685 (V5G02_02685) pilJ 522359..523303 (+) 945 WP_263328823.1 PilW family protein Machinery gene
  V5G02_RS02690 (V5G02_02690) pilK 523282..523890 (+) 609 WP_047920987.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G02_RS02695 (V5G02_02695) pilL 523892..524365 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  V5G02_RS02700 (V5G02_02700) - 524435..524743 (-) 309 WP_263328824.1 AzlD family protein -
  V5G02_RS02705 (V5G02_02705) - 524740..525451 (-) 712 Protein_523 AzlC family ABC transporter permease -
  V5G02_RS02710 (V5G02_02710) dut 525617..526069 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5G02_RS02715 (V5G02_02715) dapC 526141..527328 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5G02_RS02720 (V5G02_02720) yaaA 527484..528263 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17412.10 Da        Isoelectric Point: 9.3990

>NTDB_id=848830 V5G02_RS02695 WP_170959666.1 523892..524365(+) (pilL) [Neisseria gonorrhoeae strain WHO_S2_2024]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLGIFVSGYKM
NPKIAKKYSVSVMFVDKEKSRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQAYSDTLSADSGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=848830 V5G02_RS02695 WP_170959666.1 523892..524365(+) (pilL) [Neisseria gonorrhoeae strain WHO_S2_2024]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGGAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAATGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGCCTATTCGGACACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

93.631

100

0.936
  pilX Neisseria meningitidis 8013

85.987

100

0.86