Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G02_RS02690 Genome accession   NZ_CP145026
Coordinates   523282..523890 (+) Length   202 a.a.
NCBI ID   WP_047920987.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S2_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 518282..528890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G02_RS02665 (V5G02_02665) - 518604..519185 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G02_RS02670 (V5G02_02670) dnaB 519349..520755 (+) 1407 WP_047923824.1 replicative DNA helicase -
  V5G02_RS02675 (V5G02_02675) pilH 521063..521725 (+) 663 WP_263328822.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G02_RS02680 (V5G02_02680) pilV/pilI 521757..522362 (+) 606 WP_353074677.1 type IV pilus modification protein PilV Regulator
  V5G02_RS02685 (V5G02_02685) pilJ 522359..523303 (+) 945 WP_263328823.1 PilW family protein Machinery gene
  V5G02_RS02690 (V5G02_02690) pilK 523282..523890 (+) 609 WP_047920987.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G02_RS02695 (V5G02_02695) pilL 523892..524365 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  V5G02_RS02700 (V5G02_02700) - 524435..524743 (-) 309 WP_263328824.1 AzlD family protein -
  V5G02_RS02705 (V5G02_02705) - 524740..525451 (-) 712 Protein_523 AzlC family ABC transporter permease -
  V5G02_RS02710 (V5G02_02710) dut 525617..526069 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5G02_RS02715 (V5G02_02715) dapC 526141..527328 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5G02_RS02720 (V5G02_02720) yaaA 527484..528263 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21896.78 Da        Isoelectric Point: 8.0870

>NTDB_id=848829 V5G02_RS02690 WP_047920987.1 523282..523890(+) (pilK) [Neisseria gonorrhoeae strain WHO_S2_2024]
MRKQNALTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNANEESFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=848829 V5G02_RS02690 WP_047920987.1 523282..523890(+) (pilK) [Neisseria gonorrhoeae strain WHO_S2_2024]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTACGGACAAATAATGCTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGCACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.955