Detailed information NTG0848635

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LU688_RS08830
• Genome accession: NZ_CP128543
• Coordinates: 1880329..1882539 (+)
• Length: 736 a.a.
• NCBI ID: WP_104444244.1
• Uniprot ID: -
• Organism: Pseudomonas soli strain NMI4264_15
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1875329..1887539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LU688_RS08800 (LU688_08800)	-	1876312..1876551 (-)	240	WP_023631455.1	DUF3077 domain-containing protein	-
LU688_RS08805 (LU688_08805)	-	1876548..1876787 (-)	240	WP_023631456.1	hypothetical protein	-
LU688_RS08810 (LU688_08810)	-	1877188..1877811 (+)	624	WP_104444246.1	glutathione S-transferase	-
LU688_RS08815 (LU688_08815)	-	1877945..1878877 (+)	933	WP_104444245.1	ABC transporter ATP-binding protein	-
LU688_RS08820 (LU688_08820)	-	1878874..1879653 (+)	780	WP_023631459.1	ABC transporter permease	-
LU688_RS08825 (LU688_08825)	-	1879537..1880184 (-)	648	WP_158659543.1	DUF2062 domain-containing protein	-
LU688_RS08830 (LU688_08830)	comA	1880329..1882539 (+)	2211	WP_104444244.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LU688_RS08835 (LU688_08835)	exbB	1882663..1883298 (+)	636	WP_031315993.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LU688_RS08840 (LU688_08840)	-	1883295..1883729 (+)	435	WP_023632003.1	biopolymer transporter ExbD	-
LU688_RS08845 (LU688_08845)	lpxK	1883729..1884739 (+)	1011	WP_038705672.1	tetraacyldisaccharide 4'-kinase	-
LU688_RS08850 (LU688_08850)	-	1884773..1884958 (+)	186	WP_003247142.1	Trm112 family protein	-
LU688_RS08855 (LU688_08855)	kdsB	1884955..1885719 (+)	765	WP_094010656.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LU688_RS08860 (LU688_08860)	-	1885719..1886183 (+)	465	WP_038705674.1	low molecular weight protein-tyrosine-phosphatase	-
LU688_RS08865 (LU688_08865)	murB	1886180..1887199 (+)	1020	WP_160291067.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79732.56 Da
• Isoelectric Point: 11.1676

>NTDB_id=848635 LU688_RS08830 WP_104444244.1 1880329..1882539(+) (comA) [Pseudomonas soli strain NMI4264_15]
MRAGMLALVLGLLSLRFLPVLPPVGWLIPLLLLALACLRTRIWPLGWFVLGGCWACWSAQQALDDRLAPALDGRTLWLEG
RVVGLPTRTERGVRFELEHAESRRAQLPRRLQLSWFAGPELRAGERWRLAVNLRQPHGLLNPHGPDREALLLARGIGATG
SVKAGEQVGQAAVHWRDAVRQRLMNLDAHGREAALTALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPSRWPWLPWACGLGMAAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRHLGAALPLLLALSGVLLINPL
ASLLPGFWLSFAAVGVLVLCFSARLGAWRPWQAWSRAQWVIAVGLLPVLLALGLPVSLTAPLANLLAVPWISFAVLPLAL
LGTATLPVAGVGEGLLWLAGLSLEGLFRLLAQLAGQLPAWLPEPLPLWAWLLVALGALLLLLPRGVPLRLPGAVMLLALW
APREQVPLGQVQVWQLDVGQGLAVLLRTRHHALLYDAGPAHGDSDLGESVVLPTLRRLGVRHLDLMLVSHGHADHAGGAA
AVRRGLPVTRVLAGEVAGLAPAALCESGERWRWDGVDFELWHWPQGTSSNDRSCVLRVVANGERLLLAGDMEAAAERAWL
AASEDPRIDWLQAPHHGSRTSSTEPFIKALAPRGVMISRGRNNGFGHPHAQVIERYRRHGVQVHDTALAGALELRLGRQG
AVVEGRAQRRFWREGE

Nucleotide

• Length: 2211 bp

>NTDB_id=848635 LU688_RS08830 WP_104444244.1 1880329..1882539(+) (comA) [Pseudomonas soli strain NMI4264_15]
ATGCGCGCAGGGATGCTGGCCCTGGTGCTCGGGCTGTTGAGCCTGCGCTTTTTGCCCGTTTTGCCGCCGGTCGGGTGGCT
GATTCCGTTGCTGTTGCTGGCCTTGGCCTGTCTGCGCACGCGGATCTGGCCGCTGGGCTGGTTCGTGCTGGGTGGCTGTT
GGGCCTGCTGGTCGGCGCAGCAGGCGCTGGATGATCGACTGGCCCCGGCGCTGGATGGCCGCACACTGTGGTTGGAGGGG
CGGGTGGTGGGGCTGCCGACTCGCACGGAGCGCGGCGTGCGTTTCGAGCTGGAGCATGCTGAGTCGCGCCGGGCGCAATT
GCCCAGGCGCCTGCAACTTAGCTGGTTTGCCGGGCCTGAATTGCGCGCCGGTGAGCGTTGGCGCCTGGCGGTGAACCTGC
GCCAGCCCCATGGGCTGCTCAACCCCCATGGCCCGGACCGCGAAGCATTGTTGTTGGCCCGGGGTATCGGCGCCACTGGC
TCGGTCAAGGCCGGCGAGCAGGTCGGGCAGGCTGCGGTGCATTGGCGCGATGCCGTGCGCCAGCGGTTGATGAACTTGGA
TGCCCATGGGCGCGAGGCGGCGCTGACGGCCCTGGTGCTGGGCGACGGCGCCGGGCTCGCGCGCGAGGATTGGCAGACCC
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCATATCGGGCTGTTGGCCGGGCTGGTGTACGGCCTG
GTCGCGGGCCTGGCGCGGTTGGGCGCCTGGCCATCGCGCTGGCCGTGGCTGCCCTGGGCTTGTGGCCTGGGCATGGCCGC
GGCATTGGGCTACGGCTGGCTGGCCGGCTTCGGCGTGCCGGTGCAACGGGCCTGCCTGATGCTGGCGGTGGTGTTGCTCT
GGCGCCTGCGCTTCAGGCACCTGGGGGCAGCCTTGCCGCTGCTGTTGGCGTTGTCGGGGGTGTTGCTGATCAATCCATTG
GCCAGTCTGCTGCCGGGTTTCTGGCTGTCATTTGCCGCGGTTGGCGTGCTGGTGCTGTGCTTCTCTGCCCGGCTCGGCGC
CTGGCGGCCCTGGCAGGCCTGGAGCCGCGCCCAGTGGGTAATCGCCGTGGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGGTCAGCCTGACGGCGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGTTTCGCGGTGTTGCCCCTGGCCTTG
CTTGGTACGGCGACGTTGCCAGTGGCTGGGGTGGGGGAGGGGCTGCTGTGGCTGGCGGGGCTTTCGCTGGAGGGGCTGTT
TCGCCTGCTGGCGCAGCTTGCGGGGCAGTTGCCTGCATGGCTGCCCGAACCGTTGCCGCTGTGGGCCTGGCTGTTGGTCG
CGCTGGGCGCGCTGTTGTTGCTGCTGCCTCGGGGCGTGCCGTTGCGCTTGCCGGGCGCGGTGATGCTGCTGGCCTTGTGG
GCGCCGCGTGAGCAGGTGCCCCTTGGGCAGGTGCAGGTGTGGCAGCTGGATGTCGGCCAGGGCCTGGCGGTGCTGCTGCG
TACCCGTCATCACGCGCTGTTGTACGACGCCGGGCCTGCGCACGGGGACAGCGACCTGGGCGAGAGCGTGGTGCTGCCGA
CCTTGCGCAGGTTGGGGGTCAGGCACCTCGACCTGATGCTGGTCAGCCACGGTCACGCCGATCATGCCGGCGGGGCGGCG
GCGGTGCGCCGGGGGCTGCCGGTGACGCGGGTGCTGGCCGGGGAGGTTGCCGGGCTTGCGCCTGCCGCGCTGTGCGAAAG
TGGTGAGCGCTGGCGCTGGGATGGGGTCGATTTCGAGCTGTGGCATTGGCCGCAAGGCACGTCCAGCAACGACCGTTCCT
GCGTGCTGCGGGTGGTGGCCAATGGCGAGCGCCTGCTGCTGGCCGGCGACATGGAGGCCGCGGCGGAGCGGGCTTGGCTG
GCGGCCAGCGAGGATCCGCGTATCGACTGGCTGCAGGCGCCGCACCATGGCAGCCGCACGTCGTCCACCGAACCGTTCAT
CAAGGCGCTGGCGCCGCGCGGGGTGATGATTTCGCGGGGGAGGAACAACGGTTTCGGGCATCCGCATGCGCAGGTGATCG
AGCGCTATCGGCGCCATGGGGTGCAGGTGCATGACACGGCGCTGGCGGGCGCGCTGGAGTTGCGCCTGGGGCGCCAGGGT
GCGGTGGTGGAGGGGCGTGCGCAGCGCAGGTTCTGGCGCGAAGGCGAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-676)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.75	97.826	0.575
comA	Ralstonia pseudosolanacearum GMI1000	36.071	100	0.412