Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LU688_RS08835 Genome accession   NZ_CP128543
Coordinates   1882663..1883298 (+) Length   211 a.a.
NCBI ID   WP_031315993.1    Uniprot ID   A0AAJ5SRG4
Organism   Pseudomonas soli strain NMI4264_15     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877663..1888298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU688_RS08815 (LU688_08815) - 1877945..1878877 (+) 933 WP_104444245.1 ABC transporter ATP-binding protein -
  LU688_RS08820 (LU688_08820) - 1878874..1879653 (+) 780 WP_023631459.1 ABC transporter permease -
  LU688_RS08825 (LU688_08825) - 1879537..1880184 (-) 648 WP_158659543.1 DUF2062 domain-containing protein -
  LU688_RS08830 (LU688_08830) comA 1880329..1882539 (+) 2211 WP_104444244.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LU688_RS08835 (LU688_08835) exbB 1882663..1883298 (+) 636 WP_031315993.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LU688_RS08840 (LU688_08840) - 1883295..1883729 (+) 435 WP_023632003.1 biopolymer transporter ExbD -
  LU688_RS08845 (LU688_08845) lpxK 1883729..1884739 (+) 1011 WP_038705672.1 tetraacyldisaccharide 4'-kinase -
  LU688_RS08850 (LU688_08850) - 1884773..1884958 (+) 186 WP_003247142.1 Trm112 family protein -
  LU688_RS08855 (LU688_08855) kdsB 1884955..1885719 (+) 765 WP_094010656.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LU688_RS08860 (LU688_08860) - 1885719..1886183 (+) 465 WP_038705674.1 low molecular weight protein-tyrosine-phosphatase -
  LU688_RS08865 (LU688_08865) murB 1886180..1887199 (+) 1020 WP_160291067.1 UDP-N-acetylmuramate dehydrogenase -
  LU688_RS08870 (LU688_08870) - 1887250..1888116 (-) 867 WP_160291068.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22829.14 Da        Isoelectric Point: 7.3616

>NTDB_id=848636 LU688_RS08835 WP_031315993.1 1882663..1883298(+) (exbB) [Pseudomonas soli strain NMI4264_15]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=848636 LU688_RS08835 WP_031315993.1 1882663..1883298(+) (exbB) [Pseudomonas soli strain NMI4264_15]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGTTGCCATGGCGATCGTCGT
CGAGCGTCTATGGACCTTGCGCGCCAGCCGTGTCAGCCCACCGCACTTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCAGCCTCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CGGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTACTGGCCGGCGGTATTTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82