Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QTN49_RS18000 Genome accession   NZ_CP128504
Coordinates   3608839..3609987 (-) Length   382 a.a.
NCBI ID   WP_003156336.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123434     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3603839..3614987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN49_RS17970 (QTN49_17970) - 3603975..3604733 (-) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  QTN49_RS17975 (QTN49_17975) - 3604727..3605674 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  QTN49_RS17980 (QTN49_17980) ceuB 3605664..3606617 (-) 954 WP_104843085.1 ABC transporter permease Machinery gene
  QTN49_RS17985 (QTN49_17985) - 3607032..3608396 (+) 1365 WP_025649998.1 aspartate kinase -
  QTN49_RS17990 (QTN49_17990) - 3608491..3608586 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  QTN49_RS17995 (QTN49_17995) phrC 3608736..3608855 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QTN49_RS18000 (QTN49_18000) rapC 3608839..3609987 (-) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  QTN49_RS18005 (QTN49_18005) - 3610140..3611573 (-) 1434 WP_289414088.1 HAMP domain-containing sensor histidine kinase -
  QTN49_RS18010 (QTN49_18010) - 3611560..3612243 (-) 684 WP_014416901.1 response regulator transcription factor -
  QTN49_RS18015 (QTN49_18015) - 3612456..3613889 (+) 1434 WP_063636993.1 ABC transporter permease -
  QTN49_RS18020 (QTN49_18020) - 3613904..3614587 (+) 684 WP_063636994.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45521.82 Da        Isoelectric Point: 5.0732

>NTDB_id=848031 QTN49_RS18000 WP_003156336.1 3608839..3609987(-) (rapC) [Bacillus velezensis strain SRCM123434]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=848031 QTN49_RS18000 WP_003156336.1 3608839..3609987(-) (rapC) [Bacillus velezensis strain SRCM123434]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.199

100

0.822
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568