Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QTN48_RS19905 Genome accession   NZ_CP128503
Coordinates   3855132..3856280 (-) Length   382 a.a.
NCBI ID   WP_003156336.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123422     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3850132..3861280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS19875 (QTN48_19875) - 3850270..3851028 (-) 759 WP_017419272.1 ABC transporter ATP-binding protein -
  QTN48_RS19880 (QTN48_19880) - 3851022..3851969 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  QTN48_RS19885 (QTN48_19885) ceuB 3851959..3852912 (-) 954 WP_014416904.1 ABC transporter permease Machinery gene
  QTN48_RS19890 (QTN48_19890) - 3853325..3854689 (+) 1365 WP_053285479.1 aspartate kinase -
  QTN48_RS19895 (QTN48_19895) - 3854784..3854879 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  QTN48_RS19900 (QTN48_19900) phrC 3855029..3855148 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QTN48_RS19905 (QTN48_19905) rapC 3855132..3856280 (-) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  QTN48_RS19910 (QTN48_19910) - 3856439..3857866 (-) 1428 WP_103527150.1 HAMP domain-containing sensor histidine kinase -
  QTN48_RS19915 (QTN48_19915) - 3857853..3858536 (-) 684 WP_014416901.1 response regulator transcription factor -
  QTN48_RS19920 (QTN48_19920) - 3858749..3860182 (+) 1434 WP_063636993.1 ABC transporter permease -
  QTN48_RS19925 (QTN48_19925) - 3860197..3860880 (+) 684 WP_063636994.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45521.82 Da        Isoelectric Point: 5.0732

>NTDB_id=847955 QTN48_RS19905 WP_003156336.1 3855132..3856280(-) (rapC) [Bacillus velezensis strain SRCM123422]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=847955 QTN48_RS19905 WP_003156336.1 3855132..3856280(-) (rapC) [Bacillus velezensis strain SRCM123422]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.199

100

0.822
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568