Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   QTN48_RS19900 Genome accession   NZ_CP128503
Coordinates   3855029..3855148 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain SRCM123422     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3850029..3860148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS19875 (QTN48_19875) - 3850270..3851028 (-) 759 WP_017419272.1 ABC transporter ATP-binding protein -
  QTN48_RS19880 (QTN48_19880) - 3851022..3851969 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  QTN48_RS19885 (QTN48_19885) ceuB 3851959..3852912 (-) 954 WP_014416904.1 ABC transporter permease Machinery gene
  QTN48_RS19890 (QTN48_19890) - 3853325..3854689 (+) 1365 WP_053285479.1 aspartate kinase -
  QTN48_RS19895 (QTN48_19895) - 3854784..3854879 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  QTN48_RS19900 (QTN48_19900) phrC 3855029..3855148 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QTN48_RS19905 (QTN48_19905) rapC 3855132..3856280 (-) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  QTN48_RS19910 (QTN48_19910) - 3856439..3857866 (-) 1428 WP_103527150.1 HAMP domain-containing sensor histidine kinase -
  QTN48_RS19915 (QTN48_19915) - 3857853..3858536 (-) 684 WP_014416901.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=847954 QTN48_RS19900 WP_003156334.1 3855029..3855148(-) (phrC) [Bacillus velezensis strain SRCM123422]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=847954 QTN48_RS19900 WP_003156334.1 3855029..3855148(-) (phrC) [Bacillus velezensis strain SRCM123422]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718