Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QTN48_RS05205 Genome accession   NZ_CP128503
Coordinates   995995..996639 (+) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain SRCM123422     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 990995..1001639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS05180 (QTN48_05180) - 991393..991734 (-) 342 WP_181816577.1 hypothetical protein -
  QTN48_RS05185 (QTN48_05185) degQ 992200..992340 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  QTN48_RS05190 (QTN48_05190) comQ 992471..993409 (+) 939 WP_289394878.1 class 1 isoprenoid biosynthesis enzyme Regulator
  QTN48_RS05195 (QTN48_05195) - 993409..993585 (+) 177 WP_087634937.1 competence pheromone ComX -
  QTN48_RS05200 (QTN48_05200) comP 993605..995914 (+) 2310 WP_087634938.1 histidine kinase Regulator
  QTN48_RS05205 (QTN48_05205) comA 995995..996639 (+) 645 WP_014418762.1 response regulator transcription factor Regulator
  QTN48_RS05210 (QTN48_05210) - 996661..997044 (+) 384 WP_017419422.1 hotdog fold thioesterase -
  QTN48_RS05215 (QTN48_05215) mnhG 997084..997458 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  QTN48_RS05220 (QTN48_05220) - 997442..997726 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  QTN48_RS05225 (QTN48_05225) - 997726..998202 (-) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  QTN48_RS05230 (QTN48_05230) - 998208..999689 (-) 1482 WP_017419418.1 Na+/H+ antiporter subunit D -
  QTN48_RS05235 (QTN48_05235) - 999682..1000023 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  QTN48_RS05240 (QTN48_05240) - 1000023..1000454 (-) 432 WP_087634939.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=847904 QTN48_RS05205 WP_014418762.1 995995..996639(+) (comA) [Bacillus velezensis strain SRCM123422]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=847904 QTN48_RS05205 WP_014418762.1 995995..996639(+) (comA) [Bacillus velezensis strain SRCM123422]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86