Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QTN48_RS02890 Genome accession   NZ_CP128503
Coordinates   565670..567055 (+) Length   461 a.a.
NCBI ID   WP_237586808.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123422     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560670..572055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS02870 (QTN48_02870) - 561817..562464 (-) 648 WP_007407485.1 YigZ family protein -
  QTN48_RS02875 (QTN48_02875) degS 562687..563850 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  QTN48_RS02880 (QTN48_02880) degU 563927..564616 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN48_RS02885 (QTN48_02885) - 564714..565562 (+) 849 WP_237586810.1 DegV family protein -
  QTN48_RS02890 (QTN48_02890) comFA 565670..567055 (+) 1386 WP_237586808.1 DEAD/DEAH box helicase Machinery gene
  QTN48_RS02895 (QTN48_02895) - 567113..567397 (+) 285 WP_017418816.1 competence protein ComFB -
  QTN48_RS02900 (QTN48_02900) comFC 567403..568092 (+) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  QTN48_RS02905 (QTN48_02905) - 568166..568585 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  QTN48_RS02910 (QTN48_02910) flgM 568655..568921 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QTN48_RS02915 (QTN48_02915) - 568936..569418 (+) 483 WP_003151394.1 flagellar protein FlgN -
  QTN48_RS02920 (QTN48_02920) flgK 569434..570951 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  QTN48_RS02925 (QTN48_02925) flgL 570963..571880 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52610.03 Da        Isoelectric Point: 10.1919

>NTDB_id=847897 QTN48_RS02890 WP_237586808.1 565670..567055(+) (comFA) [Bacillus velezensis strain SRCM123422]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=847897 QTN48_RS02890 WP_237586808.1 565670..567055(+) (comFA) [Bacillus velezensis strain SRCM123422]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623