Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QTN48_RS02880 Genome accession   NZ_CP128503
Coordinates   563927..564616 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM123422     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 558927..569616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN48_RS02860 (QTN48_02860) - 559443..560519 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  QTN48_RS02865 (QTN48_02865) - 560619..561812 (-) 1194 WP_151140083.1 LCP family protein -
  QTN48_RS02870 (QTN48_02870) - 561817..562464 (-) 648 WP_007407485.1 YigZ family protein -
  QTN48_RS02875 (QTN48_02875) degS 562687..563850 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  QTN48_RS02880 (QTN48_02880) degU 563927..564616 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN48_RS02885 (QTN48_02885) - 564714..565562 (+) 849 WP_237586810.1 DegV family protein -
  QTN48_RS02890 (QTN48_02890) comFA 565670..567055 (+) 1386 WP_237586808.1 DEAD/DEAH box helicase Machinery gene
  QTN48_RS02895 (QTN48_02895) - 567113..567397 (+) 285 WP_017418816.1 competence protein ComFB -
  QTN48_RS02900 (QTN48_02900) comFC 567403..568092 (+) 690 WP_217425079.1 phosphoribosyltransferase family protein Machinery gene
  QTN48_RS02905 (QTN48_02905) - 568166..568585 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  QTN48_RS02910 (QTN48_02910) flgM 568655..568921 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QTN48_RS02915 (QTN48_02915) - 568936..569418 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=847896 QTN48_RS02880 WP_003219701.1 563927..564616(+) (degU) [Bacillus velezensis strain SRCM123422]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=847896 QTN48_RS02880 WP_003219701.1 563927..564616(+) (degU) [Bacillus velezensis strain SRCM123422]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1