Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QSJ10_RS10225 Genome accession   NZ_CP128494
Coordinates   1882046..1882342 (-) Length   98 a.a.
NCBI ID   WP_080706542.1    Uniprot ID   -
Organism   Geobacillus stearothermophilus ATCC 12980     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1877046..1887342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ10_RS10190 (QSJ10_10190) - 1877524..1879188 (+) 1665 WP_053532197.1 SNF2-related protein -
  QSJ10_RS10195 (QSJ10_10195) - 1879175..1879969 (+) 795 WP_033016406.1 YqhG family protein -
  QSJ10_RS10200 (QSJ10_10200) - 1880066..1880245 (-) 180 WP_033016405.1 YqzE family protein -
  QSJ10_RS10205 (QSJ10_10205) comGG 1880386..1880775 (-) 390 WP_033016402.1 competence type IV pilus minor pilin ComGG -
  QSJ10_RS10210 (QSJ10_10210) comGF 1880884..1881285 (-) 402 WP_230581369.1 competence type IV pilus minor pilin ComGF -
  QSJ10_RS10215 (QSJ10_10215) - 1881309..1881635 (-) 327 WP_033016399.1 hypothetical protein -
  QSJ10_RS10220 (QSJ10_10220) comGD 1881619..1882062 (-) 444 WP_227412606.1 competence type IV pilus minor pilin ComGD -
  QSJ10_RS10225 (QSJ10_10225) comGC 1882046..1882342 (-) 297 WP_080706542.1 competence type IV pilus major pilin ComGC Machinery gene
  QSJ10_RS10230 (QSJ10_10230) comGB 1882384..1883412 (-) 1029 WP_033016395.1 competence type IV pilus assembly protein ComGB -
  QSJ10_RS10235 (QSJ10_10235) comGA 1883409..1884482 (-) 1074 WP_011231917.1 competence type IV pilus ATPase ComGA Machinery gene
  QSJ10_RS10240 (QSJ10_10240) - 1884675..1885373 (+) 699 WP_011231918.1 helix-turn-helix domain-containing protein -
  QSJ10_RS10245 (QSJ10_10245) - 1885530..1885772 (+) 243 WP_033010198.1 DUF2626 domain-containing protein -
  QSJ10_RS10250 (QSJ10_10250) - 1885807..1886932 (-) 1126 Protein_1946 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10725.53 Da        Isoelectric Point: 6.7062

>NTDB_id=847695 QSJ10_RS10225 WP_080706542.1 1882046..1882342(-) (comGC) [Geobacillus stearothermophilus ATCC 12980]
MNQKGFTLIEMLIVLMVISVLLLIAIPNIAKHNSMINEKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISANGDVSESGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=847695 QSJ10_RS10225 WP_080706542.1 1882046..1882342(-) (comGC) [Geobacillus stearothermophilus ATCC 12980]
GTGAACCAAAAAGGGTTTACGCTCATTGAAATGTTGATCGTCCTGATGGTCATTTCCGTGCTGCTGCTCATTGCGATTCC
GAACATTGCGAAACATAACAGCATGATTAACGAAAAAGGGTGCGAAGCGTTTCTGAACACCGTGCAGGCGCAAGTGAAGG
CATACGAGATGGAACATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCCATCCAAATCAGCGCGAACGGCGATGTGAGTGAAAGTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.747

92.857

0.49
  comGC Staphylococcus aureus MW2

44.086

94.898

0.418
  comGC Staphylococcus aureus N315

44.086

94.898

0.418