Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   V4941_RS15995 Genome accession   NZ_CP144736
Coordinates   3596911..3598986 (-) Length   691 a.a.
NCBI ID   WP_012703308.1    Uniprot ID   C1DK41
Organism   Azotobacter vinelandii DJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3591911..3603986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4941_RS15965 (V4941_15960) phoB 3592170..3592859 (-) 690 WP_012703315.1 phosphate regulon transcriptional regulator PhoB -
  V4941_RS15970 (V4941_15965) ubiA 3592955..3593842 (-) 888 WP_012703314.1 4-hydroxybenzoate octaprenyltransferase -
  V4941_RS15975 (V4941_15970) - 3593872..3594423 (-) 552 WP_012703313.1 chorismate lyase -
  V4941_RS15980 (V4941_15975) - 3594563..3594730 (+) 168 WP_012703312.1 rubredoxin -
  V4941_RS15985 (V4941_15980) - 3594952..3595224 (+) 273 WP_012703311.1 HU family DNA-binding protein -
  V4941_RS15990 (V4941_15985) - 3595434..3596831 (-) 1398 Protein_3143 HDOD domain-containing protein -
  V4941_RS15995 (V4941_15990) recG 3596911..3598986 (-) 2076 WP_012703308.1 ATP-dependent DNA helicase RecG Machinery gene
  V4941_RS16000 (V4941_15995) - 3598983..3599918 (-) 936 WP_012703307.1 hydrogen peroxide-inducible genes activator -
  V4941_RS16005 (V4941_16000) - 3600006..3600866 (+) 861 WP_012703306.1 NAD-dependent epimerase/dehydratase family protein -
  V4941_RS16010 (V4941_16005) - 3600863..3601411 (-) 549 WP_338468738.1 DUF6436 domain-containing protein -
  V4941_RS16015 (V4941_16010) - 3601521..3602459 (+) 939 WP_012703304.1 alpha/beta hydrolase -
  V4941_RS16020 (V4941_16015) - 3602464..3603201 (-) 738 WP_012703303.1 DUF2059 domain-containing protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 75924.59 Da        Isoelectric Point: 7.0419

>NTDB_id=847645 V4941_RS15995 WP_012703308.1 3596911..3598986(-) (recG) [Azotobacter vinelandii DJ]
MTELATIPVTALKGVGAALAEKLARVGLETLQDLLFHLPLRYQDRTRITPIGALRPGQDAVVEGTVAAADVVMGRRRSLL
VRLQDGSGSLSLRFYHFSTAQKDALKRGTPLRCYGEVRPGASGLEIYHPEYRAQNGLEPAPVEQTLTPIYPTTEGLTQQR
LRGLTEQALTRLGPHSLPDWLPAELARAHRLGPLDEAIRYLHRPPPDADLEELAEGRHWAQHRLAFEELLTHQLSLQRLR
ESLRSQQAPALPPASRLPQLFLANLGFAPTGAQRRVGAEIAHDLSRSEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHYLNFARWLEPLGIDLAWLAGKLKGKARGAALEKIAGGCPMVVGTHALFQDEVRFRNLALAIIDEQHR
FGVQQRLALRQKGIDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTLVIADSRRLEVIERVRAACLE
GRQAYWVCTLIEESEELTCQAAETTFEELSAALGELAVGLIHGRMKPAEKAAVMEEFKAGRLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSTASHCVLLYHAPLSQLGRERLAIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVREAAQDLLACWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=847645 V4941_RS15995 WP_012703308.1 3596911..3598986(-) (recG) [Azotobacter vinelandii DJ]
ATGACCGAACTGGCGACGATCCCGGTCACCGCGCTGAAGGGCGTCGGCGCGGCGCTCGCCGAGAAGCTCGCCCGGGTCGG
CCTGGAGACCCTACAGGACCTGCTGTTCCACCTGCCGCTGCGCTACCAGGACCGCACCCGCATCACCCCGATCGGCGCCC
TGCGCCCCGGCCAGGATGCGGTGGTCGAGGGCACGGTGGCCGCCGCCGACGTCGTCATGGGCCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCAGCCTGTCCCTGCGTTTCTACCACTTCAGTACCGCGCAGAAGGATGCGCTCAAGCG
CGGCACCCCGCTGCGTTGCTACGGCGAGGTGCGCCCCGGCGCCTCGGGCCTGGAGATCTACCACCCGGAATACCGCGCGC
AGAACGGCCTGGAGCCGGCGCCGGTGGAACAGACCCTGACGCCCATCTACCCGACCACCGAAGGCCTCACCCAGCAGCGC
CTGCGCGGTCTGACCGAGCAGGCGCTGACCCGCCTCGGCCCGCACAGCCTGCCGGACTGGCTGCCGGCGGAACTGGCCCG
CGCCCACCGCCTCGGTCCGCTGGACGAGGCGATCCGCTATTTGCACCGGCCGCCGCCGGATGCCGACCTCGAGGAGCTGG
CCGAAGGCCGGCACTGGGCCCAGCATCGTCTGGCCTTCGAGGAACTGCTGACCCACCAGTTGTCCCTGCAGCGGCTGCGC
GAGAGCCTGCGCAGCCAGCAGGCGCCGGCCCTGCCGCCGGCCAGCAGGCTGCCACAGCTGTTCCTCGCCAACCTCGGCTT
CGCCCCCACCGGCGCCCAGCGCCGGGTCGGCGCCGAGATCGCCCACGACCTCAGCCGGAGCGAACCCATGCTGCGCCTGG
TACAGGGCGACGTCGGCGCCGGCAAGACGGTGGTCGCCGCGCTGGCTGCGCTGCAGGCCATCGAGGCGGGCTACCAGGTG
GCCCTGATGGCGCCCACCGAGATCCTCGCCGAGCAGCACTACCTGAACTTCGCCCGCTGGCTGGAGCCGCTGGGCATCGA
CCTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCGCGCGGCGCGGCGCTGGAGAAGATCGCCGGCGGCTGCCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGACGAGGTGCGCTTTCGCAACCTGGCCCTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCATCGACGGCCGCCTCTGCCCGCACCAGTTGATCATGACCGC
CACGCCCATCCCGCGTACCCTGGCGATGAGTGCCTACGCCGACCTGGACACCTCGATACTCGACGAACTGCCGCCCGGAC
GCACCCCGGTGAACACCCTGGTGATCGCCGACAGCCGGCGCCTGGAGGTGATCGAGCGGGTCCGCGCCGCCTGTCTGGAA
GGCCGCCAGGCCTACTGGGTGTGCACGCTGATCGAGGAGTCCGAGGAACTGACCTGCCAGGCCGCGGAAACCACCTTCGA
GGAACTCTCCGCAGCGCTCGGCGAACTGGCCGTCGGGCTGATCCACGGACGCATGAAGCCGGCGGAAAAGGCCGCGGTGA
TGGAGGAGTTCAAGGCCGGCCGGCTGCAACTACTGGTCGCCACCACGGTGATCGAAGTGGGCGTGGACGTGCCCAACGCC
AGCCTGATGATCATCGAAAACCCCGAGCGCCTGGGACTCGCCCAGTTGCACCAGTTGCGCGGCCGGGTCGGACGCGGCAG
CACCGCCAGCCACTGCGTGCTGCTCTACCACGCGCCGCTGTCGCAGCTCGGGCGCGAGCGCCTGGCGATCATGCGCGAAA
CCTCGGACGGCTTCGTCATCGCCGAGAAGGACCTGGAACTGCGCGGTCCCGGCGAGATGCTCGGCACCCGCCAGACCGGC
CTTTTACAGTTCAAGGTCGCCGACCTGATGCGCGACGCCGATCTGCTACCGGCGGTACGCGAAGCGGCCCAGGATTTGCT
TGCATGCTGGCCACAACATGTCAGCCCGCTATTGGAACGCTGGCTCCGTCATGGCCAACAATACGGACAAGTTTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-673)

DEAD/DEAH box helicase (DEAD)

(293-430)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DK41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

51.042

97.25

0.496
  recG/mmsA Streptococcus pneumoniae R6

40.902

96.237

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.902

96.237

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

39.852

97.685

0.389