Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QSV55_RS11300 Genome accession   NZ_CP128470
Coordinates   2070648..2071160 (-) Length   170 a.a.
NCBI ID   WP_133452138.1    Uniprot ID   -
Organism   Macrococcus bovicus strain LI0213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2065648..2076160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV55_RS11275 (QSV55_11300) xpt 2066052..2066630 (-) 579 WP_289650233.1 xanthine phosphoribosyltransferase -
  QSV55_RS11280 (QSV55_11305) - 2067043..2068167 (+) 1125 WP_289650234.1 DUF2382 domain-containing protein -
  QSV55_RS11285 (QSV55_11310) - 2068231..2068977 (+) 747 WP_289650235.1 ZIP family metal transporter -
  QSV55_RS11290 (QSV55_11315) - 2069010..2070227 (-) 1218 WP_289650236.1 carboxylate--amine ligase -
  QSV55_RS11295 (QSV55_11320) rpsR 2070380..2070622 (-) 243 WP_133452139.1 30S ribosomal protein S18 -
  QSV55_RS11300 (QSV55_11325) ssbA 2070648..2071160 (-) 513 WP_133452138.1 single-stranded DNA-binding protein Machinery gene
  QSV55_RS11305 (QSV55_11330) rpsF 2071182..2071472 (-) 291 WP_133452137.1 30S ribosomal protein S6 -
  QSV55_RS11310 (QSV55_11335) - 2071582..2071905 (-) 324 WP_133452136.1 hypothetical protein -
  QSV55_RS11315 (QSV55_11340) ychF 2071920..2073020 (-) 1101 WP_289650237.1 redox-regulated ATPase YchF -
  QSV55_RS11320 (QSV55_11345) - 2073033..2073227 (-) 195 WP_133452134.1 DUF951 domain-containing protein -
  QSV55_RS11325 (QSV55_11350) - 2073220..2074095 (-) 876 WP_289650238.1 mechanosensitive ion channel family protein -
  QSV55_RS11330 (QSV55_11355) - 2074102..2074947 (-) 846 WP_289650239.1 ParB/RepB/Spo0J family partition protein -
  QSV55_RS11335 (QSV55_11360) - 2074940..2075698 (-) 759 WP_133452131.1 AAA family ATPase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18629.27 Da        Isoelectric Point: 4.6856

>NTDB_id=847583 QSV55_RS11300 WP_133452138.1 2070648..2071160(-) (ssbA) [Macrococcus bovicus strain LI0213]
MINRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFLNCVVFRKQAENVNNYLSKGSLAGVDGRLQSR
SYDNQEGRKVYVTEVVCDSVQFLEPKGANQNRQDNVSNDYSSYDPGFGGQSQGQNYQANNQTTNTSSPASNNPFANATGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=847583 QSV55_RS11300 WP_133452138.1 2070648..2071160(-) (ssbA) [Macrococcus bovicus strain LI0213]
ATGATTAATCGTGTTGTATTAGTAGGTCGTTTAACGAAGGATCCCGAATACAGAGTCACACCCTCAGGCGTATCAGTTGC
TACGTTTACATTAGCGGTCAACCGCACATTTACGAACGCTCAAGGAGAACGCCAGGCGGACTTCTTAAACTGTGTCGTAT
TCCGTAAACAAGCTGAGAACGTTAATAACTACCTAAGTAAAGGTAGCTTAGCCGGTGTTGACGGTAGATTGCAATCTCGC
AGCTATGATAATCAGGAAGGCCGTAAAGTGTATGTGACTGAAGTCGTCTGCGACTCAGTGCAGTTCTTGGAACCTAAAGG
TGCTAACCAGAATCGTCAGGACAATGTGTCTAATGACTATTCAAGTTATGACCCAGGATTCGGTGGACAATCACAAGGTC
AGAATTATCAGGCAAACAATCAAACAACTAACACATCCTCTCCTGCATCAAACAATCCGTTTGCGAACGCAACAGGGCCG
ATTGATATCAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.101

100

0.612
  ssb Latilactobacillus sakei subsp. sakei 23K

55.429

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376