Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QSV55_RS06850 Genome accession   NZ_CP128470
Coordinates   1251118..1253481 (-) Length   787 a.a.
NCBI ID   WP_289649602.1    Uniprot ID   -
Organism   Macrococcus bovicus strain LI0213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246118..1258481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV55_RS06830 (QSV55_06845) - 1247183..1247509 (-) 327 WP_133450833.1 DUF1292 domain-containing protein -
  QSV55_RS06835 (QSV55_06850) ruvX 1247522..1247944 (-) 423 WP_133450834.1 Holliday junction resolvase RuvX -
  QSV55_RS06840 (QSV55_06855) - 1247937..1248206 (-) 270 WP_133450835.1 IreB family regulatory phosphoprotein -
  QSV55_RS06845 (QSV55_06860) alaS 1248269..1250887 (-) 2619 WP_289649601.1 alanine--tRNA ligase -
  QSV55_RS06850 (QSV55_06865) recD2 1251118..1253481 (-) 2364 WP_289649602.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QSV55_RS06855 (QSV55_06870) - 1253484..1254146 (-) 663 WP_289651062.1 tetratricopeptide repeat protein -
  QSV55_RS06860 (QSV55_06875) mnmA 1254197..1255309 (-) 1113 WP_289649603.1 tRNA 2-thiouridine(34) synthase MnmA -
  QSV55_RS06865 (QSV55_06880) - 1255312..1256457 (-) 1146 WP_289649604.1 cysteine desulfurase family protein -
  QSV55_RS06870 (QSV55_06885) - 1256590..1257477 (+) 888 WP_289649605.1 nuclease-related domain-containing protein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 89117.54 Da        Isoelectric Point: 4.6487

>NTDB_id=847569 QSV55_RS06850 WP_289649602.1 1251118..1253481(-) (recD2) [Macrococcus bovicus strain LI0213]
MENMSLFEQSYIKGTVTRLLFQNADNYYTVLKVEVLESNEDFDEEATVTGYLPHIGEGDTYTFTGKIVTHAKYGKQLSAD
KFEKDMPQTREGIIHYLSSDLFKGIGKKLAQQIVDTLGEDALTQIMNDKEVLNRVPKLSKDKQEMIYRTVSENQAIEKTM
IRLNEWGFGPQLAMKIFQFYKEETLKVIEQSPYQLVMDIQGIGFTKADELARKLGIAGSHPERLRAALVFTLEQACLQNG
HTYVEEQALLEAAYHILTASGEDVDSGLLVNKLTELSEEKIVVNDQNRIYMPSLFFSEVKTVQILHRLHQTEDKVKQFEQ
SEVLLAIGELEAQFDVTYAEKQREALETAMSHKMMILSGGPGTGKTTVIRGIVNLYAELHGLSLDYKDYEGTDFPVAVAA
PTGRASKRLSESTGLEATTIHRLIGWTRENKPDDILENDISAKLVIIDEMSMVDTWLMFQLMRAVPNDCQIIFVGDQDQL
PSVGPGQVFRDLIDSRIMPQVELAEVYRQQEGSSIIELAHQIKKNQPFDISARYNDRSFIPCRTEQIPSVINQVVSKAVD
KGYDMRDIQVLAPIYKGKAGIKFLNKELQQILNPKEEDKRELEFGDVVYREGDKVLQLVNRPEDNVFNGDIGEVVGIFMA
AENALNKDVVIVDYDGNEVTYTKQDLTELTHAYCCSIHKAQGSEFPIVIMPVVKAYYRMLQKNILYTGLTRARQSLVLCG
ERQAFEDGIQRMGLERMTSFAMHLRDYFGSEETDIPVGEMTAENMHLISPMINMDGISPYDYETVDA

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=847569 QSV55_RS06850 WP_289649602.1 1251118..1253481(-) (recD2) [Macrococcus bovicus strain LI0213]
TTGGAGAACATGTCTTTATTCGAACAGTCCTATATTAAAGGCACAGTCACTCGTCTTCTTTTTCAGAATGCAGACAATTA
TTATACCGTGCTGAAAGTAGAAGTCCTGGAATCGAATGAAGACTTTGACGAGGAAGCGACGGTCACCGGTTATCTGCCGC
ATATCGGAGAAGGTGATACCTATACATTTACAGGCAAGATAGTCACGCATGCCAAGTATGGTAAACAGCTCTCCGCTGAC
AAATTTGAGAAAGATATGCCGCAGACAAGAGAAGGTATCATCCATTATTTGTCGAGCGATCTGTTCAAGGGGATCGGGAA
GAAGCTCGCACAGCAGATTGTGGATACGCTCGGAGAAGATGCCCTGACACAGATTATGAATGATAAGGAAGTCCTGAACC
GGGTACCGAAGCTCTCGAAGGATAAGCAGGAGATGATCTACCGGACGGTGAGTGAAAATCAGGCCATTGAGAAGACGATG
ATCCGACTGAACGAGTGGGGTTTCGGCCCGCAGCTTGCGATGAAAATCTTTCAGTTCTATAAAGAAGAGACGCTGAAAGT
CATCGAGCAGTCCCCTTATCAGCTTGTGATGGATATTCAGGGGATTGGTTTTACGAAAGCGGATGAACTGGCCAGAAAAC
TGGGCATTGCAGGCAGTCACCCCGAAAGGCTGCGTGCGGCACTTGTCTTTACACTGGAGCAGGCATGTCTGCAGAATGGC
CATACCTATGTTGAGGAACAGGCTTTACTGGAAGCAGCGTATCATATATTGACCGCTTCAGGCGAAGACGTTGATTCCGG
TCTACTCGTCAACAAGCTGACTGAACTCAGTGAGGAAAAGATAGTGGTGAATGACCAGAACCGTATCTACATGCCGAGTC
TCTTCTTTTCGGAGGTGAAGACCGTCCAGATTCTGCACCGTCTGCATCAGACAGAGGATAAGGTCAAGCAGTTTGAGCAG
TCAGAAGTGCTGCTCGCAATCGGTGAACTGGAGGCGCAGTTCGATGTGACTTATGCTGAAAAACAGCGTGAGGCACTTGA
GACAGCGATGAGTCATAAGATGATGATTCTCTCCGGGGGGCCAGGGACCGGAAAGACGACAGTGATACGCGGGATTGTGA
ATCTATATGCTGAACTTCATGGTCTCAGCCTTGACTATAAGGACTATGAAGGCACGGATTTTCCTGTCGCTGTCGCAGCA
CCGACAGGACGTGCATCTAAACGTCTGTCAGAATCCACTGGTCTGGAGGCGACGACTATCCACCGGCTGATCGGCTGGAC
TCGTGAGAATAAACCGGATGATATCCTGGAAAACGATATATCGGCGAAGCTTGTCATCATTGATGAGATGTCGATGGTCG
ATACGTGGCTGATGTTCCAGCTGATGCGTGCCGTGCCGAACGATTGCCAGATCATCTTTGTCGGTGACCAGGATCAGCTG
CCGTCAGTTGGGCCGGGCCAGGTCTTCCGTGACCTGATTGATTCCAGGATCATGCCGCAGGTTGAACTTGCGGAGGTCTA
TCGTCAGCAGGAAGGCTCATCGATCATTGAACTTGCCCATCAGATCAAGAAGAATCAGCCCTTTGATATTTCGGCGAGAT
ACAATGACCGTTCATTTATACCATGCCGAACGGAGCAGATTCCCTCTGTTATCAATCAGGTGGTCTCAAAGGCTGTGGAT
AAGGGCTATGACATGCGGGACATCCAGGTGCTGGCTCCTATCTACAAAGGTAAAGCAGGCATCAAATTCCTGAATAAGGA
GCTGCAGCAGATTCTTAATCCGAAAGAAGAGGACAAACGGGAGCTCGAGTTCGGTGATGTCGTATACCGGGAGGGCGATA
AAGTGCTGCAGCTGGTCAATCGGCCGGAAGATAATGTTTTCAACGGTGATATCGGTGAGGTGGTCGGTATTTTTATGGCA
GCAGAAAATGCGCTGAACAAGGATGTCGTCATCGTGGACTATGACGGCAATGAGGTGACCTACACGAAACAGGATCTCAC
TGAACTGACCCACGCCTACTGCTGTTCCATCCATAAGGCTCAAGGCTCTGAATTTCCGATTGTGATTATGCCGGTCGTCA
AAGCCTATTACCGCATGCTGCAGAAAAACATCCTTTACACCGGTCTGACGCGTGCCAGACAATCCCTTGTTCTCTGCGGG
GAACGCCAGGCTTTTGAGGACGGGATCCAGAGGATGGGTCTCGAGCGCATGACGTCCTTCGCTATGCATCTGCGGGATTA
CTTCGGCAGCGAGGAAACTGATATCCCGGTCGGTGAGATGACGGCAGAGAATATGCATCTGATTTCACCGATGATCAATA
TGGACGGGATTTCTCCCTATGACTATGAAACAGTTGACGCATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(338-543)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.07

100

0.527