Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V4939_RS08540 Genome accession   NZ_CP144733
Coordinates   1821011..1823020 (+) Length   669 a.a.
NCBI ID   WP_012700625.1    Uniprot ID   C1DEN1
Organism   Azotobacter vinelandii DJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1816011..1828020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4939_RS08515 (V4939_08515) rlmM 1817317..1818378 (+) 1062 WP_012700621.1 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM -
  V4939_RS08520 (V4939_08520) tusA 1818431..1818688 (+) 258 WP_012700622.1 sulfurtransferase TusA -
  V4939_RS08525 (V4939_08525) comE1/comEA 1818860..1819192 (+) 333 WP_012700623.1 helix-hairpin-helix domain-containing protein Machinery gene
  V4939_RS08535 (V4939_08535) - 1819517..1820713 (-) 1197 WP_012700624.1 amino acid aminotransferase -
  V4939_RS08540 (V4939_08540) uvrB 1821011..1823020 (+) 2010 WP_012700625.1 excinuclease ABC subunit UvrB Machinery gene
  V4939_RS08545 (V4939_08545) gltX 1823107..1824588 (+) 1482 WP_338460392.1 glutamate--tRNA ligase -
  V4939_RS08550 (V4939_08550) - 1824907..1826031 (+) 1125 WP_175555919.1 mechanosensitive ion channel family protein -
  V4939_RS08555 (V4939_08555) - 1826094..1826957 (-) 864 WP_012700628.1 oxaloacetate decarboxylase -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 76038.52 Da        Isoelectric Point: 5.2191

>NTDB_id=847538 V4939_RS08540 WP_012700625.1 1821011..1823020(+) (uvrB) [Azotobacter vinelandii DJ]
MSEFQLVTRFQPAGDQPDAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIARVQRPTLVLAPNKTLAAQLYGEFKSFF
PHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQMRLSATKALMERPDAIIVATVSSIYGLGDPASYLKMVLHI
DRGDRLDQRALLRRLADLQYTRNDLDFARATFRVRGDVIDVFPAESELEAIRIELFDDEVESLAAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVEQIKAELKERLEHLRERGKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGLP
PPTLYDYLPDNALMVIDESHVTVPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWERIAPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPELEVRPALTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVTILDADKEGFLRSERSLIQTIGRAARNLNGKAILYADSITGSMR
RAIDETERRRAKQIAFNETHGIVPRGVKKDIQDILEGAVVPGARGRKRVARAAEESGQYAAELRSPSEIDKRIRQLEEKM
YALARDLEFEAAARLRDEIQALRERRLQV

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=847538 V4939_RS08540 WP_012700625.1 1821011..1823020(+) (uvrB) [Azotobacter vinelandii DJ]
ATGTCCGAATTTCAGCTGGTGACCCGTTTCCAGCCCGCCGGCGACCAGCCCGATGCCATCCGCCAGATGGTCGAGGGGCT
GGAGGCCGGCCTGTCGCACCAGACCCTGCTCGGGGTGACCGGCTCCGGCAAGACCTTCAGCATCGCCAACGTGATCGCCA
GGGTACAGCGTCCGACCCTGGTGCTGGCGCCCAACAAGACCCTGGCGGCGCAGCTCTACGGCGAGTTCAAGAGCTTCTTT
CCGCACAACGCGGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAAGCCTATGTGCCGTCCTCCGACACCTA
CATCGAGAAGGACGCCTCGATCAACGACCACATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGATGGAGCGGCCGG
ACGCGATCATCGTCGCCACCGTCTCGTCGATCTACGGCCTGGGCGATCCGGCCAGCTACCTGAAGATGGTGCTGCACATC
GACCGCGGCGACCGACTCGACCAGCGCGCCCTGCTGCGCCGCCTGGCCGACCTGCAGTACACCCGCAACGACCTGGACTT
CGCCCGCGCCACCTTCCGCGTGCGTGGCGACGTGATCGACGTCTTCCCCGCCGAATCCGAGCTGGAGGCGATCCGCATCG
AGCTGTTCGACGACGAGGTGGAGAGTCTGGCCGCCTTCGATCCCTTGACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTCACCCCGCGCGAGACGCTGCTGGAAGCGGTGGAGCAGATCAAGGCCGAACTCAA
GGAGCGCCTGGAGCACCTGCGCGAGCGCGGCAAGCTGGTGGAGGCGCAGCGCCTGGAACAGCGCACCCGCTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCCCGCTACCTCTCCGGCCGTGCGCCGGGGCTGCCG
CCGCCGACCCTCTACGACTACCTGCCGGACAACGCGCTGATGGTGATCGACGAATCCCACGTCACCGTCCCGCAGGTCGG
CGCCATGTACAAGGGCGACCGTTCGCGCAAGGAGACCCTGGTGGAATACGGCTTCCGCCTGCCGTCGGCGCTGGACAACC
GGCCGATGCGCTTCGACGAATGGGAGCGCATCGCCCCGCAGACCATCTTCGTCTCGGCGACCCCCGGCCCCTACGAAGCC
GAGCACGCCGGACGGGTGATCGAACAGGTGGTGCGCCCCACCGGGCTGGTCGACCCCGAGCTGGAGGTGCGCCCGGCGCT
GACCCAGGTGGACGACCTGCTGTCGGAGATCCGCAAGCGCGTCGCCGTCGAGGAGCGCGTGCTGGTCACCACCCTGACCA
AGCGCATGGCCGAGGACCTCACCGATTACCTCGGCGACCACGACGTGCGGGTGCGCTACCTGCACTCGGACATCGACACC
GTGGAGCGCGTGGAGATCATCCGCGACCTGCGCAGCGGCGCCTTCGACGTGCTGGTGGGCATCAATCTGCTGCGCGAGGG
GCTGGATATGCCCGAAGTATCGCTGGTGACGATTCTCGACGCGGACAAGGAAGGTTTCCTGCGCAGCGAACGCTCGCTGA
TCCAGACCATCGGCCGCGCCGCGCGCAACCTCAACGGCAAGGCGATTCTCTACGCCGACAGCATCACCGGTTCGATGCGG
CGCGCCATCGACGAGACCGAGCGGCGCCGGGCCAAGCAGATCGCCTTCAACGAAACCCACGGCATCGTGCCCAGGGGCGT
CAAGAAGGACATCCAGGACATCCTCGAAGGCGCCGTGGTGCCCGGTGCGCGCGGTCGCAAGCGGGTGGCCAGGGCGGCGG
AGGAGAGCGGCCAGTACGCCGCCGAGCTGCGCTCGCCGAGCGAGATCGACAAGCGCATCCGTCAGCTCGAGGAGAAGATG
TACGCCTTGGCCCGCGATCTGGAGTTCGAGGCCGCGGCGCGGCTGCGCGACGAGATCCAGGCGCTGCGCGAGCGGCGGCT
GCAGGTCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(433-542)

Type III restriction enzyme, res subunit (ResIII)

(12-96)

UvrB/uvrC motif (UVR)

(630-664)

Ultra-violet resistance protein B (UvrB)

(550-591)

UvrB interaction domain (UvrB_inter)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DEN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.325

99.253

0.559
  uvrB Streptococcus pneumoniae R6

56.325

99.253

0.559
  uvrB Streptococcus pneumoniae D39

56.325

99.253

0.559