Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   V4942_RS07825 Genome accession   NZ_CP144687
Coordinates   1453268..1455268 (-) Length   666 a.a.
NCBI ID   WP_041443590.1    Uniprot ID   -
Organism   Thermus thermophilus strain TTHB27_delta_cmr4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448268..1460268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4942_RS07805 (V4942_07805) - 1449515..1450393 (+) 879 WP_011173901.1 ABC transporter ATP-binding protein -
  V4942_RS07810 (V4942_07810) - 1450386..1451156 (+) 771 WP_011173902.1 ABC transporter permease -
  V4942_RS07815 (V4942_07815) - 1451153..1452217 (-) 1065 WP_011173903.1 aminopeptidase -
  V4942_RS07820 (V4942_07820) - 1452238..1453260 (+) 1023 WP_011173904.1 E3 binding domain-containing protein -
  V4942_RS07825 (V4942_07825) uvrB 1453268..1455268 (-) 2001 WP_041443590.1 excinuclease ABC subunit UvrB Machinery gene
  V4942_RS07830 (V4942_07830) - 1455369..1458215 (-) 2847 WP_011173906.1 S-layer homology domain-containing protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 76360.37 Da        Isoelectric Point: 5.4045

>NTDB_id=847407 V4942_RS07825 WP_041443590.1 1453268..1455268(-) (uvrB) [Thermus thermophilus strain TTHB27_delta_cmr4]
MTFRYRGPAPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPE
NAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVER
GKPYPREALLERLLELGYQRNDIDLSPGRFRARGEVLEIFPAYETEPIRVELFGDEVERILQVHPVTGERLRELPGFVLF
PATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAERLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTL
LDYFPEDFLVFLDESHVTVPQLMGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSG
RVVEQIIRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQ
ALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIE
ETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEI
RALEARLQGVKTPEPVPGGRRRRKRR

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=847407 V4942_RS07825 WP_041443590.1 1453268..1455268(-) (uvrB) [Thermus thermophilus strain TTHB27_delta_cmr4]
ATGACCTTCCGTTACCGGGGGCCAGCGCCCAAGGGGGACCAGCCCAAGGCCATCGCCGGGCTCGTGGAGGCCTTGAGGGA
CGGGGAGCGCTTCGTCACCCTCCTCGGGGCCACGGGCACGGGAAAGACGGTGACCATGGCCAAGGTCATTGAGGCCCTGG
GAAGGCCCGCCTTGGTCCTCGCCCCCAACAAGATCCTCGCGGCCCAGCTTGCGGCGGAGTTCAGGGAGCTCTTCCCGGAG
AACGCCGTGGAGTACTTCATCAGCTACTACGACTACTACCAGCCCGAGGCCTACGTCCCGGGGAAGGACCTTTACATAGA
GAAGGACGCCTCCATCAACCCCGAGATTGAGCGCTTAAGGCACTCCACCACCCGAAGCCTCCTCACGCGGCGGGACGTGA
TCGTGGTGGCCTCGGTTTCCGCCATCTACGGCCTCGGGGACCCGAGGGAGTACAGGGCCAGGAACCTGGTGGTGGAAAGG
GGCAAGCCCTACCCCAGGGAGGCCCTTTTGGAGCGCCTCCTGGAACTCGGCTACCAGCGGAACGACATAGACCTTTCCCC
GGGGCGCTTCCGGGCGAGGGGGGAGGTGTTGGAGATCTTCCCCGCCTACGAGACCGAGCCCATCCGGGTGGAGCTCTTTG
GCGACGAGGTGGAGCGCATCCTCCAGGTCCACCCCGTCACCGGGGAGCGGCTTCGGGAGCTTCCCGGGTTTGTCCTCTTC
CCCGCCACCCACTACCTCTCCCCGGAGGGGTTAGAGGAGATCCTGAAGGAGATTGAGAAGGAGCTCTGGGAGAGGGTCCG
CTACTTTGAGGAAAGGGGGGAGGTCCTTTACGCAGAGCGCCTCAAGGAGCGCACCCTCTACGACCTGGAGATGCTAAGGG
TCATGGGCACCTGCCCTGGGGTGGAGAACTACGCCCGCTACTTCACGGGGAAGGCCCCGGGGGAGCCCCCTTACACCCTC
CTGGACTACTTCCCCGAGGACTTCCTGGTCTTCCTGGACGAGTCCCACGTGACCGTGCCCCAGCTCATGGGGATGTACCG
GGGGGACTACGCCCGCAAGAAGACCCTGGTGGACTACGGCTTCCGCCTGCCCTCGGCGTTGGACAACCGCCCCCTTCGCT
TTGAGGAGTTTTTGGAGAGGGTTTCCCAGGTGGTCTTCGTCTCCGCCACCCCGGGGCCCTTTGAGCTAGCGCATTCGGGG
CGGGTGGTGGAGCAGATCATCCGGCCCACGGGGCTATTGGACCCCCTGGTGCGGGTCAAGCCCACGGAGAACCAGATCCT
GGACCTCATGGAGGGGATCCGGGAGAGGGCGGCAAGGGGCGAGCGCACCCTGGTCACGGTCCTCACCGTGCGCATGGCCG
AGGAGCTCACGAGCTTTTTGGTGGAGCACGGGATCCGGGCCCGCTACCTCCACCACGAGCTGGACGCCTTTGAGCGCCAG
GCCCTGATCCGGGACCTGAGGCTTGGCCACTACGACTGCCTCGTGGGGATCAACCTCCTAAGGGAGGGCCTGGACATCCC
CGAGGTCTCCCTGGTGGCCATCCTGGACGCGGACAAGGAGGGCTTCCTTAGAAGCGAGCGCAGCCTCATCCAGACCATCG
GCCGGGCGGCGAGGAACGCCAGGGGCGAGGTCTGGCTCTACGCCGACCGGGTCTCCGAGGCCATGCAGAGGGCCATAGAG
GAGACGAACCGGAGAAGGGCCCTCCAGGAGGCCTACAACCTTGAGCACGGCATCACCCCGGAGACGGTGCGGAAGGAGGT
TAGGGCCGTCATCCGCCCCGAGGGCTACGAGGAGGCCCCCCTCGAGGCCGACCTCTCCGGGGAGGACCTGAGGGAGAGGA
TCGCCGAGCTGGAGCTTGCCATGTGGCAGGCGGCGGAGGCTTTGGACTTTGAGCGGGCGGCGAGGCTTAGGGACGAGATC
CGGGCCCTCGAGGCCCGCCTCCAGGGCGTGAAGACCCCCGAGCCCGTCCCCGGGGGGCGGCGGAGGCGGAAGCGGAGGTG
A

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(13-135)

UvrB interaction domain (UvrB_inter)

(157-245)

Ultra-violet resistance protein B (UvrB)

(546-588)

UvrB/uvrC motif (UVR)

(612-645)

Helicase conserved C-terminal domain (Helicase_C)

(430-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.811

96.997

0.551
  uvrB Streptococcus pneumoniae R6

56.811

96.997

0.551
  uvrB Streptococcus pneumoniae D39

56.811

96.997

0.551