Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   QN310_RS16170 Genome accession   NZ_CP128411
Coordinates   3328005..3328718 (+) Length   237 a.a.
NCBI ID   WP_174231837.1    Uniprot ID   -
Organism   Brevibacillus brevis strain HNCS-1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3323005..3333718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN310_RS16150 (QN310_16150) - 3324642..3325184 (+) 543 WP_289673021.1 hypothetical protein -
  QN310_RS16155 (QN310_16155) - 3325448..3326179 (-) 732 WP_289673023.1 ABC transporter permease -
  QN310_RS16160 (QN310_16160) - 3326192..3326941 (-) 750 WP_289673025.1 ABC transporter permease -
  QN310_RS16165 (QN310_16165) - 3326941..3327852 (-) 912 WP_289673027.1 ABC transporter ATP-binding protein -
  QN310_RS16170 (QN310_16170) scnR 3328005..3328718 (+) 714 WP_174231837.1 response regulator transcription factor Regulator
  QN310_RS16175 (QN310_16175) - 3328719..3330101 (+) 1383 WP_289673031.1 HAMP domain-containing sensor histidine kinase -
  QN310_RS16180 (QN310_16180) - 3330192..3331223 (-) 1032 WP_289673034.1 ABC transporter substrate-binding protein -
  QN310_RS16185 (QN310_16185) - 3331220..3331978 (-) 759 WP_173606098.1 ABC transporter permease -
  QN310_RS16190 (QN310_16190) - 3331978..3332760 (-) 783 WP_289673036.1 ABC transporter ATP-binding protein -
  QN310_RS16195 (QN310_16195) tenA 3332745..3333425 (-) 681 WP_064199701.1 thiaminase II -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27130.52 Da        Isoelectric Point: 5.4349

>NTDB_id=847375 QN310_RS16170 WP_174231837.1 3328005..3328718(+) (scnR) [Brevibacillus brevis strain HNCS-1]
MEEWKQKKVLIVEDELEIRNMIDGFLRKEGFSRIFHAGSCKEALVICASDKPDVAILDVMLPDGDGFGLLTSIRRFSQIP
VIFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLLVILRRVYAPPQIDRLPVFQLGDSTIDLEAAIVTRDHHEYAL
TAKEHALLRKLYENRGRIVTSDALCQSVWGDDYYGYENTLMVHMRRIREKIEPCPSTPEYLLTVRGLGYKLLVKEEL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=847375 QN310_RS16170 WP_174231837.1 3328005..3328718(+) (scnR) [Brevibacillus brevis strain HNCS-1]
ATGGAAGAGTGGAAACAGAAAAAAGTGCTCATCGTGGAAGATGAGCTGGAAATCAGAAACATGATCGATGGATTTTTACG
TAAGGAAGGATTCTCTCGAATTTTTCATGCGGGTAGTTGTAAAGAGGCGTTAGTGATATGCGCTTCGGACAAGCCAGATG
TCGCGATCCTGGATGTCATGCTGCCTGATGGCGATGGATTTGGACTATTGACTTCGATCCGTCGTTTCTCGCAAATCCCT
GTCATTTTTCTGTCGGCGAGAGGGGAAGATGAAGATCGATTGCTCGGACTTGGCCTGGGCGCTGACGACTATATTGTGAA
ACCATTTTTACCGCGCGAGCTCGTTCTGCGTCTCCTGGTCATTTTACGACGCGTTTACGCTCCTCCCCAAATCGATCGTC
TGCCCGTTTTCCAGCTTGGTGACAGTACGATCGATTTGGAGGCAGCAATCGTGACGAGAGATCACCACGAATATGCTCTG
ACTGCAAAGGAACACGCGCTCTTGCGAAAACTCTATGAAAATCGAGGACGAATCGTCACGAGCGATGCCCTGTGCCAATC
CGTATGGGGGGACGATTACTACGGGTATGAAAACACCCTGATGGTTCATATGAGGCGCATTCGCGAAAAGATCGAGCCAT
GCCCGTCCACTCCTGAATATTTGCTCACGGTAAGAGGACTCGGATACAAATTACTCGTAAAGGAAGAGTTGTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.87

97.046

0.494
  micA Streptococcus pneumoniae Cp1015

42.105

96.203

0.405
  vicR Streptococcus mutans UA159

41.485

96.624

0.401