Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QSV38_RS03965 Genome accession   NZ_CP128410
Coordinates   760707..761201 (-) Length   164 a.a.
NCBI ID   WP_277836862.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 755707..766201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS03950 (QSV38_03950) - 758362..759306 (+) 945 WP_277836861.1 magnesium transporter CorA family protein -
  QSV38_RS03955 (QSV38_03955) - 759322..759978 (+) 657 WP_130554636.1 DUF1129 family protein -
  QSV38_RS03960 (QSV38_03960) rpsR 760435..760674 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  QSV38_RS03965 (QSV38_03965) ssb 760707..761201 (-) 495 WP_277836862.1 single-stranded DNA-binding protein Machinery gene
  QSV38_RS03970 (QSV38_03970) rpsF 761213..761503 (-) 291 WP_277836863.1 30S ribosomal protein S6 -
  QSV38_RS03975 (QSV38_03975) - 761645..762634 (-) 990 WP_277836864.1 lipoate--protein ligase -
  QSV38_RS03980 (QSV38_03980) - 762718..763896 (-) 1179 Protein_790 family 1 glycosylhydrolase -
  QSV38_RS03985 (QSV38_03985) - 764114..764962 (-) 849 WP_289649233.1 HAD family hydrolase -
  QSV38_RS03990 (QSV38_03990) trpA 765369..766175 (-) 807 WP_217374664.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18115.86 Da        Isoelectric Point: 4.7187

>NTDB_id=847305 QSV38_RS03965 WP_277836862.1 760707..761201(-) (ssb) [Streptococcus parasuis strain 7500]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTARDGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=847305 QSV38_RS03965 WP_277836862.1 760707..761201(-) (ssb) [Streptococcus parasuis strain 7500]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGGGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGACAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTTTTGGAAAGCCGTAC
TGCCCGTGATGGCCAAGGGGGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366