Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   QSV38_RS02920 Genome accession   NZ_CP128410
Coordinates   555501..556502 (-) Length   333 a.a.
NCBI ID   WP_277836884.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 550501..561502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS02900 (QSV38_02900) - 551983..552354 (-) 372 Protein_575 MazG-like protein -
  QSV38_RS02905 (QSV38_02905) - 552618..552992 (-) 375 WP_277836766.1 hypothetical protein -
  QSV38_RS02910 (QSV38_02910) - 553007..554320 (-) 1314 WP_274504669.1 glycosyltransferase family 4 protein -
  QSV38_RS02915 (QSV38_02915) - 554341..555384 (-) 1044 WP_217374814.1 glycosyltransferase family 4 protein -
  QSV38_RS02920 (QSV38_02920) ccpA 555501..556502 (-) 1002 WP_277836884.1 catabolite control protein A Regulator
  QSV38_RS02925 (QSV38_02925) - 556708..557793 (+) 1086 WP_217374813.1 Xaa-Pro peptidase family protein -
  QSV38_RS02930 (QSV38_02930) tgt 558015..559157 (-) 1143 WP_217374812.1 tRNA guanosine(34) transglycosylase Tgt -
  QSV38_RS02935 (QSV38_02935) - 559425..560282 (+) 858 WP_277843282.1 DUF975 family protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36763.78 Da        Isoelectric Point: 5.5299

>NTDB_id=847301 QSV38_RS02920 WP_277836884.1 555501..556502(-) (ccpA) [Streptococcus parasuis strain 7500]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANVYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASSDAVKLLAKNNKKIAFVSGPLVDDINGKIRFSGYKEGLQASGLEFNEGLVFESKYKYEEGYALAERVLNAG
ATAAYVAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=847301 QSV38_RS02920 WP_277836884.1 555501..556502(-) (ccpA) [Streptococcus parasuis strain 7500]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAAGAAAACACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCCAATGTCTATTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTTGTCAATACATTGTTTTCTAAGCAAGTTGATGGTATTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCGGAATTTTCACGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAGCTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATCGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAATTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAGTGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGCCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATGTCGCTGAAGATGAAATCGCTGCCGGTTTGTTAAATGGTATTAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATTGGCGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

100

0.796
  ccpA Streptococcus pneumoniae D39

78.979

100

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.61

99.399

0.583