Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   V3Z63_RS33630 Genome accession   NZ_CP144289
Coordinates   7057161..7059236 (+) Length   691 a.a.
NCBI ID   WP_031693223.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7052161..7064236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3Z63_RS33600 (V3Z63_33600) - 7052583..7052963 (+) 381 WP_003096609.1 RidA family protein -
  V3Z63_RS33605 (V3Z63_33605) - 7053018..7053749 (+) 732 WP_023108888.1 hypothetical protein -
  V3Z63_RS33610 (V3Z63_33610) - 7053756..7054376 (-) 621 WP_003096613.1 LysE family translocator -
  V3Z63_RS33615 (V3Z63_33615) - 7054443..7055243 (-) 801 WP_003114367.1 AraC family transcriptional regulator -
  V3Z63_RS33620 (V3Z63_33620) - 7055243..7056094 (-) 852 WP_003096618.1 SDR family oxidoreductase -
  V3Z63_RS33625 (V3Z63_33625) oxyR 7056232..7057164 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  V3Z63_RS33630 (V3Z63_33630) recG 7057161..7059236 (+) 2076 WP_031693223.1 ATP-dependent DNA helicase RecG Machinery gene
  V3Z63_RS33635 (V3Z63_33635) - 7059326..7060735 (+) 1410 WP_003136268.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  V3Z63_RS33640 (V3Z63_33640) - 7060807..7061199 (-) 393 WP_003096629.1 hypothetical protein -
  V3Z63_RS33645 (V3Z63_33645) - 7061335..7061607 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  V3Z63_RS33650 (V3Z63_33650) alkT 7061809..7062963 (-) 1155 WP_003114369.1 rubredoxin-NAD(+) reductase AlkT -
  V3Z63_RS33655 (V3Z63_33655) - 7063015..7063182 (-) 168 WP_003098329.1 rubredoxin -
  V3Z63_RS33660 (V3Z63_33660) - 7063366..7063533 (-) 168 WP_003098330.1 rubredoxin -
  V3Z63_RS33665 (V3Z63_33665) - 7063667..7064068 (-) 402 WP_003096637.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76164.85 Da        Isoelectric Point: 7.2590

>NTDB_id=846961 V3Z63_RS33630 WP_031693223.1 7057161..7059236(+) (recG) [Pseudomonas aeruginosa strain CH1]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALDRIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=846961 V3Z63_RS33630 WP_031693223.1 7057161..7059236(+) (recG) [Pseudomonas aeruginosa strain CH1]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTGAAGGGCGTAGGCGCCGCACTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGATCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGCGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAAGGACTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCCGCGGAACTGGCCCG
CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAGCCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGTGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAAGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCGCTGGACCGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTAATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTTCTCTACCACCCGCCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAGA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

DEAD/DEAH box helicase (DEAD)

(293-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489
  recG/mmsA Streptococcus pneumoniae R6

40.719

96.671

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.719

96.671

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

40.208

97.54

0.392