Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QR290_RS25215 Genome accession   NZ_CP128260
Coordinates   5615507..5616853 (+) Length   448 a.a.
NCBI ID   WP_115079253.1    Uniprot ID   A0A345V2P1
Organism   Pseudomonas fluorescens strain PH.SM     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5610507..5621853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS25190 (QR290_25190) pgeF 5610722..5611444 (-) 723 WP_289203830.1 peptidoglycan editing factor PgeF -
  QR290_RS25195 (QR290_25195) rluD 5611441..5612403 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QR290_RS25200 (QR290_25200) - 5612556..5613572 (+) 1017 WP_085697519.1 outer membrane protein assembly factor BamD -
  QR290_RS25205 (QR290_25205) - 5613698..5613931 (+) 234 WP_115079251.1 PP0621 family protein -
  QR290_RS25210 (QR290_25210) pilS 5613921..5615510 (+) 1590 WP_289205331.1 ATP-binding protein Regulator
  QR290_RS25215 (QR290_25215) pilR 5615507..5616853 (+) 1347 WP_115079253.1 sigma-54 dependent transcriptional regulator Regulator
  QR290_RS25220 (QR290_25220) thiO 5616900..5618000 (-) 1101 WP_289203831.1 glycine oxidase ThiO -
  QR290_RS25225 (QR290_25225) - 5618058..5618459 (-) 402 WP_085648738.1 type IV pilin protein -
  QR290_RS25230 (QR290_25230) - 5618475..5621567 (-) 3093 WP_289203832.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50074.40 Da        Isoelectric Point: 6.6657

>NTDB_id=846928 QR290_RS25215 WP_115079253.1 5615507..5616853(+) (pilR) [Pseudomonas fluorescens strain PH.SM]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLANGTGQPAARLHPHALESLKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLIEGNGAAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=846928 QR290_RS25215 WP_115079253.1 5615507..5616853(+) (pilR) [Pseudomonas fluorescens strain PH.SM]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAAGCCCAGGCACTGCTGCACCGCGAGACTTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACGGCGATCAACGCCCTGAAGGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTGACACGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCGGGCAATGTCTGTACCTCGA
TCGACCGGCGCTTGCTTGGCGATTCACCGCCGATGCGCAACCTGCGCAAGCAAATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTCTACATCAGCGGCGAGTCCGGCAGCGGCAAAGAGCTGGTCGCCCGGCTGATTCACGAACAGGGCCCGCGTGCCAG
CCAGCCGTTCGTGCCAGTGAACTGCGGGGCGATTCCGTCGGAGTTGATGGAGAGCGAGTTCTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCGGTGGAGGATAAACCGGGGCTGTTTCAGGCGGCCCATGGCGGCACGCTATTTCTCGATGAAGTGGCG
GATCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGTCAACAGGA
AACTGTGGTCGATGTGCGCATCCTCTGCGCGACGCACAAGGACCTCGACGCGGAAGTGGCTGCCGAGCGCTTTCGTCAGG
ATCTGTATTACCGGCTGAACGTAATCGAACTGCGCGTACCGTCTCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GGCCACATGCTCAAGCGCCTGGCCAATGGCACCGGGCAGCCGGCGGCACGTCTTCATCCCCATGCCCTCGAGTCGCTGAA
AAACTACCGTTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTTGAGCGGGCGCATACCCTGTGTGAAAACCGCACGA
TCGAGGCCGAGGATTTACGCCTGATCGAAGGTAACGGCGCCGCTGAAGGTGGTATTGCCGATCTCACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAGCGTCGAACGCAAACTGATTCTGCAGGCGCTGGAGGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTAGGTCGATGCGCTACAGGCTCAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345V2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.135

98.884

0.792
  pilR Acinetobacter baumannii strain A118

48.261

100

0.496