Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QR290_RS25210 Genome accession   NZ_CP128260
Coordinates   5613921..5615510 (+) Length   529 a.a.
NCBI ID   WP_289205331.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5608921..5620510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS25190 (QR290_25190) pgeF 5610722..5611444 (-) 723 WP_289203830.1 peptidoglycan editing factor PgeF -
  QR290_RS25195 (QR290_25195) rluD 5611441..5612403 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QR290_RS25200 (QR290_25200) - 5612556..5613572 (+) 1017 WP_085697519.1 outer membrane protein assembly factor BamD -
  QR290_RS25205 (QR290_25205) - 5613698..5613931 (+) 234 WP_115079251.1 PP0621 family protein -
  QR290_RS25210 (QR290_25210) pilS 5613921..5615510 (+) 1590 WP_289205331.1 ATP-binding protein Regulator
  QR290_RS25215 (QR290_25215) pilR 5615507..5616853 (+) 1347 WP_115079253.1 sigma-54 dependent transcriptional regulator Regulator
  QR290_RS25220 (QR290_25220) thiO 5616900..5618000 (-) 1101 WP_289203831.1 glycine oxidase ThiO -
  QR290_RS25225 (QR290_25225) - 5618058..5618459 (-) 402 WP_085648738.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58664.39 Da        Isoelectric Point: 6.6676

>NTDB_id=846927 QR290_RS25210 WP_289205331.1 5613921..5615510(+) (pilS) [Pseudomonas fluorescens strain PH.SM]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLNSTNDEWLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIATLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLMRRLEVSENLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSARTLLGQTHLEGDLID
DHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKLWLEQFVSESREQAGER
QHIHLHIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLLIDPESTLAVLEVQDNGPGVPPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=846927 QR290_RS25210 WP_289205331.1 5613921..5615510(+) (pilS) [Pseudomonas fluorescens strain PH.SM]
GTGATCGCTGAGGCCGACAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTGAGTGT
CGGCATCACTTTGGTGTTGCTGATTTCCAGCAACATGGACAACCGTCTGCTGAACTCGACCAACGACGAGTGGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTCGAGAACATCCGCCGTCCCGCCCAGCTGTTC
GGCCTGGCACTGGTCGACATCCTGCTGCTGTGCGGGGTGTTCTATGCGGCGGGCGGCGTGGCCAGTGCGATCGGCAACTT
GCTGATCGTCTCGGTGGCCATCAGCAACACATTACTGCGACGACGCATCGGCTTGCTGATCGCCGCCATCGCCACCCTCG
GCATCGTCGGGCTCAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAACGATTACTTGCAGGCCGGTACCCTCGGC
GCCCTATGCTTTGCGGCCTCATTGCTGGTGCAAGGATTGATGCGCCGTCTCGAGGTCAGCGAGAACCTGGCCGAACAGCG
CGCCAGCGAAGTCGTGGGGCTCGAAGCCCTCAACGCGCTCATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAACGCCGGGTGCAACTGGCCAACCATAGCGCCAGGACCCTGCTGGGCCAGACACACCTTGAAGGCGACTTGATCGAC
GACCACTCGAGCGCGTTGGTCGAGCGCCTGCAACTGTGGCTGAACAACCCGACGCTGCGCCCGCAAAGCCTGAAGATCGC
CGGCAATGGCCTGGAGCTGCAGCCGAGCTTCATCGCCCTGGAACAGAGCCCGAACCGCCAGACCCTGGTGTTTCTCGAGG
ACCTCGCCCAGATCGCCCAGCAGGCCCAACAATTGAAGCTGGCCGCGCTGGGCCGGCTCACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGATGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGTCAGC
AGAGCGCGCCGCAACGGCTGGATCTCAAGCTTTGGCTGGAGCAGTTCGTCAGCGAGAGCCGTGAACAGGCCGGCGAGCGC
CAGCACATTCACCTGCACATCGGCCCGGGGGATTTCCGCACGTTGATGGATCCCGGCCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGTGCCCTTTTGCACGATCCGGCCGAGGTCTGGCTGACGCTGTTGATCGACCCCG
AAAGCACGCTGGCCGTGCTTGAGGTGCAGGACAACGGCCCCGGCGTGCCACCGGATCAGCAGGCTCACCTGTTCGAACCA
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605