Detailed information NTG0846920

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QR290_RS21855
• Genome accession: NZ_CP128260
• Coordinates: 4891506..4893749 (-)
• Length: 747 a.a.
• NCBI ID: WP_289203601.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain PH.SM
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4886506..4898749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR290_RS21820 (QR290_21820)	murB	4886906..4887925 (-)	1020	WP_289203599.1	UDP-N-acetylmuramate dehydrogenase	-
QR290_RS21825 (QR290_21825)	-	4887922..4888386 (-)	465	WP_007950772.1	low molecular weight protein-tyrosine-phosphatase	-
QR290_RS21830 (QR290_21830)	kdsB	4888386..4889150 (-)	765	WP_064383500.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QR290_RS21835 (QR290_21835)	-	4889147..4889332 (-)	186	WP_003174668.1	Trm112 family protein	-
QR290_RS21840 (QR290_21840)	lpxK	4889357..4890367 (-)	1011	WP_289203600.1	tetraacyldisaccharide 4'-kinase	-
QR290_RS21845 (QR290_21845)	-	4890367..4890795 (-)	429	WP_007950767.1	biopolymer transporter ExbD	-
QR290_RS21850 (QR290_21850)	exbB	4890792..4891427 (-)	636	WP_162803842.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QR290_RS21855 (QR290_21855)	comA	4891506..4893749 (-)	2244	WP_289203601.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QR290_RS21860 (QR290_21860)	-	4893886..4894404 (+)	519	WP_289203602.1	DUF2062 domain-containing protein	-
QR290_RS21865 (QR290_21865)	-	4894458..4895237 (-)	780	WP_011335453.1	ABC transporter permease	-
QR290_RS21870 (QR290_21870)	-	4895234..4896166 (-)	933	WP_115078862.1	ABC transporter ATP-binding protein	-
QR290_RS21875 (QR290_21875)	-	4896300..4896923 (-)	624	WP_289203603.1	glutathione S-transferase	-
QR290_RS21880 (QR290_21880)	-	4896967..4897626 (-)	660	WP_115078864.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 82014.11 Da
• Isoelectric Point: 10.0739

>NTDB_id=846920 QR290_RS21855 WP_289203601.1 4891506..4893749(-) (comA) [Pseudomonas fluorescens strain PH.SM]
MRTGMMALAVGLLTPVFLPALPPVGLLMVLPWVALMMLPFRSYPLAFLLLGFAWAGFNAQMALNDRLPHRLDGETRWVEG
RVVGLPQNVEGVVRFELADARSRHEKLPSLMRLAWYAGPEVKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGQRLAPAQWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARVGIWPMRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLVALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIDGLFRALDLIAGRWPAWVPTTMEGWICALGGLGAVLLLLPRGVPLRPLGWPLLLVLA
FPPRERLAEGVADVWQLDVGQGLAILVRTRHHTLLYDSGPRFGDFDLGERVVLPALRKLGVEHLDLMLLSHADADHAGGA
LAVAKGMPVSRVISGDPPGLPEALNAEGCESGRQWQWDGVAFHLWQWTDAHDSNQRSCVLQIEAKGERLLLTGDIDSAAE
RDLLNSALAVQTQWLQAPHHGSRSSSSMALLKALQPQAVLISRGQGNSFGHPHPTVIARYRKQGMHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPVPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=846920 QR290_RS21855 WP_289203601.1 4891506..4893749(-) (comA) [Pseudomonas fluorescens strain PH.SM]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGACTCCGGTTTTTTTACCGGCCTTGCCGCCGGTCGGGTTATT
AATGGTGTTGCCGTGGGTGGCGCTGATGATGCTGCCGTTTCGCAGCTATCCACTGGCGTTTTTGCTGCTTGGATTCGCAT
GGGCGGGTTTCAACGCGCAAATGGCGTTGAATGATCGACTGCCTCACCGACTGGATGGCGAAACGCGCTGGGTGGAAGGG
CGCGTCGTCGGCTTGCCGCAGAATGTCGAGGGCGTCGTGCGCTTTGAACTGGCCGATGCGCGCTCGCGTCACGAGAAACT
GCCATCGCTGATGCGTCTGGCCTGGTATGCCGGGCCAGAGGTCAAAAGCGGCGAACGCTGGCGACTGGCGGTCAAGCTCA
AGCGCCCCGGTGGTCTGCTCAATCCGGATGCGTTCGATTACGAAGCCTGGCTGTTGGCGCAGCGTATCGGCGCAACCGGG
ACGGTGAAGGATGGCCAGCGTCTGGCGCCAGCGCAGTGGGCCTGGCGCGACAGCATCCGCCAGCGCCTGCTTGCGGTGGA
TGCCCAAGGACGTAACGGCGCTCTGGCCGCGTTGGTACTCGGCGATGGCTCGGGACTCAGTCGCGAGGACTGGCAGACCT
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGGCTTTTGGCGGCGTTGATGTATGCGCTG
GTCGCCGGACTGGCACGGGTCGGGATTTGGCCAATGCGTTGGCCCTGGCTGCCCTGGGCGTGCGGTCTGGCGTTCGCGGC
GGCGTTGGGTTACGGCTTGCTGGCCGGGTTCGATGTGCCGGTCCGGCGGGCGTGCGTAATGGTTGCACTGGTGTTGTTGT
GGCGTTTGCGTTTTCGCCATCTCGGTGCCTGGTGGCCGTTGTTGCTGGCTTTCAACGGCGTGTTGTTGATGGATCCGCTG
GCCAGCCTGCGTCCTGGGTTGTGGCTGTCGTTCGCGGCGGTGGCTGTTTTGATCTTCACCTTCGGCGGCCGTCTGGGGCC
GTGGCGCTGGTGGCAGACCTGGACGCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGCCCGGTGCTGGTAGCGTTGAGCC
TGCCGATCAGCCTCAGTGGGCCACTGGCCAATCTGCTGGCGGTGCCGTGGGTCAGTTTTGCGGTGCTGCCGCCGGCGTTG
CTGGGCACTTTGTTGCTGCCAATCCCTTATGTCGGCGAAGGGCTGCTGTGGCTGGCCGGTGGACTGATCGATGGATTGTT
CAGGGCACTGGACCTGATTGCCGGTCGTTGGCCAGCATGGGTGCCGACGACAATGGAAGGGTGGATCTGCGCGCTGGGAG
GTCTTGGTGCAGTGCTGTTATTGCTGCCCCGAGGCGTTCCCTTGCGTCCATTGGGCTGGCCGTTGCTGCTGGTGCTGGCA
TTTCCGCCCCGGGAACGTCTGGCCGAAGGCGTGGCCGATGTCTGGCAACTGGATGTCGGCCAGGGCCTGGCGATTCTGGT
CCGTACCCGGCATCACACCTTGCTGTACGACAGCGGCCCGCGTTTCGGCGATTTCGACCTCGGCGAGCGAGTGGTGCTGC
CGGCATTGCGCAAACTGGGGGTGGAACACCTCGATCTGATGCTGCTCAGTCATGCCGATGCCGACCATGCGGGTGGCGCA
CTCGCCGTGGCGAAAGGAATGCCGGTCAGTCGGGTCATCAGCGGCGATCCGCCGGGCCTGCCCGAAGCGCTGAACGCCGA
GGGCTGTGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTTGCCTTTCATTTATGGCAGTGGACCGACGCCCATGACAGCA
ACCAGCGTTCCTGCGTTCTGCAGATCGAAGCCAAGGGCGAACGGTTGCTGTTGACCGGCGACATCGACAGCGCCGCCGAA
CGGGACCTGCTCAACAGTGCGCTGGCCGTTCAAACCCAGTGGCTGCAAGCCCCGCACCATGGCAGCCGCAGTTCCTCCTC
AATGGCCTTGCTCAAGGCTTTGCAGCCACAGGCCGTGCTGATTTCCCGAGGGCAGGGCAATTCATTCGGACATCCGCACC
CGACGGTCATTGCCCGCTACCGCAAACAGGGCATGCACATTCATGACAGCGCCGAGCAAGGTGCCATTCATCTGCAACTG
GGGCGGTTTCAGCCGGCCCGGTCGATGCGTCAACAACGCCGGTTCTGGCGCGACCCGCCGGTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (38-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.726	96.252	0.604
comA	Ralstonia pseudosolanacearum GMI1000	34.943	100	0.368