Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QR290_RS21850 Genome accession   NZ_CP128260
Coordinates   4890792..4891427 (-) Length   211 a.a.
NCBI ID   WP_162803842.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4885792..4896427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS21815 (QR290_21815) - 4886190..4886660 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  QR290_RS21820 (QR290_21820) murB 4886906..4887925 (-) 1020 WP_289203599.1 UDP-N-acetylmuramate dehydrogenase -
  QR290_RS21825 (QR290_21825) - 4887922..4888386 (-) 465 WP_007950772.1 low molecular weight protein-tyrosine-phosphatase -
  QR290_RS21830 (QR290_21830) kdsB 4888386..4889150 (-) 765 WP_064383500.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QR290_RS21835 (QR290_21835) - 4889147..4889332 (-) 186 WP_003174668.1 Trm112 family protein -
  QR290_RS21840 (QR290_21840) lpxK 4889357..4890367 (-) 1011 WP_289203600.1 tetraacyldisaccharide 4'-kinase -
  QR290_RS21845 (QR290_21845) - 4890367..4890795 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  QR290_RS21850 (QR290_21850) exbB 4890792..4891427 (-) 636 WP_162803842.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QR290_RS21855 (QR290_21855) comA 4891506..4893749 (-) 2244 WP_289203601.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QR290_RS21860 (QR290_21860) - 4893886..4894404 (+) 519 WP_289203602.1 DUF2062 domain-containing protein -
  QR290_RS21865 (QR290_21865) - 4894458..4895237 (-) 780 WP_011335453.1 ABC transporter permease -
  QR290_RS21870 (QR290_21870) - 4895234..4896166 (-) 933 WP_115078862.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.96 Da        Isoelectric Point: 7.3615

>NTDB_id=846919 QR290_RS21850 WP_162803842.1 4890792..4891427(-) (exbB) [Pseudomonas fluorescens strain PH.SM]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=846919 QR290_RS21850 WP_162803842.1 4890792..4891427(-) (exbB) [Pseudomonas fluorescens strain PH.SM]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCGGCCGCACGGGTCATCCACGAGCTGGAGCGTTACGT
CAACGCGCTGGGCACCATCGCTGCCATGTCGCCGTTGCTCGGTCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCACCGGTTCCGGCATGACCACCAATGCTTCGGTGCTGGCCGGCGGCATTTCCAAGGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCAATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848