Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QSU95_RS13955 Genome accession   NZ_CP128204
Coordinates   2967089..2967721 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio furnissii strain VFBJ05     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2962089..2972721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS13935 (QSU95_13935) - 2964006..2964479 (+) 474 WP_004728586.1 TIGR02444 family protein -
  QSU95_RS13940 (QSU95_13940) - 2964607..2965584 (+) 978 WP_004728585.1 hydrolase -
  QSU95_RS13945 (QSU95_13945) - 2965673..2965882 (+) 210 WP_004728584.1 YheU family protein -
  QSU95_RS13950 (QSU95_13950) - 2965977..2966846 (+) 870 WP_004728583.1 phosphoribulokinase -
  QSU95_RS13955 (QSU95_13955) crp 2967089..2967721 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  QSU95_RS13960 (QSU95_13960) - 2967804..2968598 (-) 795 WP_055465827.1 DUF1338 domain-containing protein -
  QSU95_RS13965 (QSU95_13965) astD 2968782..2970239 (-) 1458 WP_143680280.1 succinylglutamate-semialdehyde dehydrogenase -
  QSU95_RS13970 (QSU95_13970) astA 2970273..2971292 (-) 1020 WP_004728579.1 arginine N-succinyltransferase -
  QSU95_RS13975 (QSU95_13975) - 2971392..2972603 (-) 1212 WP_055465829.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=846783 QSU95_RS13955 WP_004728582.1 2967089..2967721(+) (crp) [Vibrio furnissii strain VFBJ05]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=846783 QSU95_RS13955 WP_004728582.1 2967089..2967721(+) (crp) [Vibrio furnissii strain VFBJ05]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACGTTGTACTACATCGTCAAAGGTTCTGTAGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTCAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCGGAAATTTCATTTAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTGATGCGCCTATCTGGTCAGATGGCTCGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTGGCGTTCTTAGACGTAACCGGTCGTATTGCACAGACCCTACTGAACTTGGCGAAACAACCCGACGCGATGACTCAC
CCAGACGGCATGCAGATTAAGATCACTCGTCAAGAGATTGGTCAAATCGTTGGCTGTTCACGTGAAACCGTGGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAAACCATCGTGGTGTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467