Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QSU95_RS01495 Genome accession   NZ_CP128204
Coordinates   317802..318452 (-) Length   216 a.a.
NCBI ID   WP_014205868.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 312802..323452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS01485 (QSU95_01485) uvrA 313843..316665 (-) 2823 WP_004724090.1 excinuclease ABC subunit UvrA -
  QSU95_RS01490 (QSU95_01490) galU 316803..317672 (-) 870 WP_172561867.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QSU95_RS01495 (QSU95_01495) qstR 317802..318452 (-) 651 WP_014205868.1 LuxR C-terminal-related transcriptional regulator Regulator
  QSU95_RS01500 (QSU95_01500) ssb 318735..319268 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  QSU95_RS01505 (QSU95_01505) csrD 319404..321398 (+) 1995 WP_049781822.1 RNase E specificity factor CsrD -
  QSU95_RS01510 (QSU95_01510) - 321406..322851 (+) 1446 WP_286211551.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24779.49 Da        Isoelectric Point: 8.7565

>NTDB_id=846757 QSU95_RS01495 WP_014205868.1 317802..318452(-) (qstR) [Vibrio furnissii strain VFBJ05]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=846757 QSU95_RS01495 WP_014205868.1 317802..318452(-) (qstR) [Vibrio furnissii strain VFBJ05]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAAGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTACGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTGTTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGCGCCTCAAACATGCAGATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACCCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.968

100

0.713
  qstR Vibrio parahaemolyticus RIMD 2210633

50.224

100

0.519
  qstR Vibrio campbellii strain DS40M4

51.389

100

0.514