Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3L48_RS27765 Genome accession   NZ_CP128196
Coordinates   5716028..5716546 (-) Length   172 a.a.
NCBI ID   WP_066389898.1    Uniprot ID   A0A3Q9QXU7
Organism   Neobacillus mesonae strain NS-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5711028..5721546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L48_RS27740 - 5712095..5713039 (-) 945 WP_286230302.1 YybS family protein -
  P3L48_RS27745 - 5713146..5714081 (-) 936 WP_286230303.1 helix-turn-helix transcriptional regulator -
  P3L48_RS27750 modA 5714224..5715030 (+) 807 WP_286230304.1 molybdate ABC transporter substrate-binding protein -
  P3L48_RS27755 modB 5715036..5715692 (+) 657 WP_066389896.1 molybdate ABC transporter permease subunit -
  P3L48_RS27760 rpsR 5715739..5715978 (-) 240 WP_066389897.1 30S ribosomal protein S18 -
  P3L48_RS27765 ssbA 5716028..5716546 (-) 519 WP_066389898.1 single-stranded DNA-binding protein Machinery gene
  P3L48_RS27770 rpsF 5716614..5716901 (-) 288 WP_066389899.1 30S ribosomal protein S6 -
  P3L48_RS27775 ychF 5717102..5718202 (-) 1101 WP_286230305.1 redox-regulated ATPase YchF -
  P3L48_RS27780 - 5718590..5721235 (+) 2646 WP_286230306.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18797.63 Da        Isoelectric Point: 4.9815

>NTDB_id=846700 P3L48_RS27765 WP_066389898.1 5716028..5716546(-) (ssbA) [Neobacillus mesonae strain NS-6]
MMNRVVLVGRLTKDPELRYTPSGVAVATFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEGQDGRRVYVTEVLAESVQFLEPKNSSGNTGGGGRSNDFYGAPPREPQGSSYGGGNQNQRQNSNQGFTRVDDDPFAGS
GQIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=846700 P3L48_RS27765 WP_066389898.1 5716028..5716546(-) (ssbA) [Neobacillus mesonae strain NS-6]
ATGATGAATCGTGTCGTGCTTGTTGGCCGTTTAACAAAGGATCCTGAATTGCGTTATACACCAAGTGGAGTAGCGGTTGC
TACCTTTACTTTGGCGGTAAATCGTCCGTTTTCCAATCAGCAGGGTGAACGCGAAGCAGACTTTATCAATTGTGTTGTTT
GGCGTAAACCAGCTGAGAATGTCGCTAACTTTTTGAAAAAGGGAAGCATGGCGGGTGTAGATGGTCGTATTCAAACGCGT
AATTACGAAGGTCAAGATGGACGCCGTGTCTATGTGACTGAGGTCTTGGCAGAAAGTGTTCAATTTCTTGAGCCTAAGAA
CTCTTCTGGCAACACTGGCGGCGGCGGAAGAAGCAACGATTTTTACGGTGCTCCTCCAAGAGAGCCTCAAGGTTCTTCAT
ATGGCGGCGGCAATCAGAATCAACGACAAAATTCCAACCAAGGGTTTACAAGAGTGGATGATGATCCATTTGCAGGAAGC
GGACAGATTGACATCTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9QXU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.598

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395