Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   P3L48_RS19260 Genome accession   NZ_CP128196
Coordinates   3878712..3879044 (-) Length   110 a.a.
NCBI ID   WP_066385444.1    Uniprot ID   -
Organism   Neobacillus mesonae strain NS-6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3873712..3884044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L48_RS19215 - 3873735..3874370 (+) 636 WP_286232349.1 MBL fold metallo-hydrolase -
  P3L48_RS19220 - 3874522..3875610 (+) 1089 WP_286229136.1 SAM-dependent methyltransferase -
  P3L48_RS19225 - 3875653..3875895 (-) 243 WP_066385429.1 DUF2626 domain-containing protein -
  P3L48_RS19230 - 3875980..3876675 (-) 696 WP_066385431.1 helix-turn-helix domain-containing protein -
  P3L48_RS19235 - 3876889..3877077 (-) 189 WP_286229139.1 YqzE family protein -
  P3L48_RS19240 comGG 3877140..3877523 (-) 384 WP_286229141.1 competence type IV pilus minor pilin ComGG -
  P3L48_RS19245 comGF 3877520..3877999 (-) 480 WP_286232350.1 competence type IV pilus minor pilin ComGF -
  P3L48_RS19250 - 3877950..3878288 (-) 339 WP_286229143.1 hypothetical protein -
  P3L48_RS19255 comGD 3878272..3878712 (-) 441 WP_286229144.1 competence type IV pilus minor pilin ComGD -
  P3L48_RS19260 comGC 3878712..3879044 (-) 333 WP_066385444.1 competence type IV pilus major pilin ComGC Machinery gene
  P3L48_RS19265 comGB 3879065..3880102 (-) 1038 WP_350267719.1 competence type IV pilus assembly protein ComGB -
  P3L48_RS19270 comGA 3880083..3881165 (-) 1083 WP_066385505.1 competence type IV pilus ATPase ComGA Machinery gene
  P3L48_RS19275 - 3881292..3882269 (-) 978 WP_286229145.1 ROK family glucokinase -
  P3L48_RS19280 - 3882276..3882485 (-) 210 WP_066385506.1 YqgQ family protein -
  P3L48_RS19285 - 3882683..3883510 (+) 828 WP_286229146.1 hypothetical protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12133.17 Da        Isoelectric Point: 7.8174

>NTDB_id=846677 P3L48_RS19260 WP_066385444.1 3878712..3879044(-) (comGC) [Neobacillus mesonae strain NS-6]
MKKKMVNSEKGFTLIEMMIVMLIISVLLIITIPNVTKHNSNINEKGCQAYVKMVQAEVQAYQVDKNKIPTLTELKSEGYI
KDDKQGCPNGKAVEINASTGEVTVAQSTES

Nucleotide


Download         Length: 333 bp        

>NTDB_id=846677 P3L48_RS19260 WP_066385444.1 3878712..3879044(-) (comGC) [Neobacillus mesonae strain NS-6]
ATGAAGAAAAAAATGGTCAATAGTGAAAAAGGGTTCACGCTGATTGAAATGATGATTGTCATGTTGATCATCTCAGTCCT
GCTGATTATCACAATTCCAAATGTTACTAAACATAATTCTAATATCAATGAAAAAGGATGTCAGGCCTACGTGAAAATGG
TACAAGCAGAAGTACAGGCATATCAGGTAGACAAAAATAAAATTCCAACACTTACGGAGTTGAAAAGTGAAGGGTATATA
AAAGATGATAAACAAGGCTGTCCAAATGGTAAGGCAGTTGAAATCAATGCAAGTACTGGTGAGGTCACAGTCGCCCAATC
GACTGAATCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.082

89.091

0.482
  comGC Staphylococcus aureus MW2

41

90.909

0.373
  comGC Staphylococcus aureus N315

41

90.909

0.373