Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRA13_RS19970 Genome accession   NZ_CP128184
Coordinates   4028363..4028698 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4023363..4033698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS19920 (QRA13_19920) comGC 4023595..4023861 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  QRA13_RS19925 (QRA13_19925) comGD 4023851..4024288 (+) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  QRA13_RS19930 (QRA13_19930) comGE 4024272..4024586 (+) 315 WP_266121853.1 competence type IV pilus minor pilin ComGE -
  QRA13_RS19935 (QRA13_19935) comGF 4024495..4024995 (+) 501 WP_266121852.1 competence type IV pilus minor pilin ComGF -
  QRA13_RS19940 (QRA13_19940) comGG 4024996..4025373 (+) 378 WP_266121851.1 competence type IV pilus minor pilin ComGG Machinery gene
  QRA13_RS19945 (QRA13_19945) - 4025430..4025609 (+) 180 WP_003153093.1 YqzE family protein -
  QRA13_RS19950 (QRA13_19950) - 4025650..4025979 (-) 330 WP_038459175.1 DUF3889 domain-containing protein -
  QRA13_RS19955 (QRA13_19955) tapA 4026238..4026909 (+) 672 WP_266121850.1 amyloid fiber anchoring/assembly protein TapA -
  QRA13_RS19960 (QRA13_19960) - 4026881..4027465 (+) 585 WP_015240205.1 signal peptidase I SipW -
  QRA13_RS19965 (QRA13_19965) - 4027530..4028315 (+) 786 WP_044802563.1 biofilm matrix protein TasA -
  QRA13_RS19970 (QRA13_19970) sinR 4028363..4028698 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  QRA13_RS19975 (QRA13_19975) sinI 4028732..4028905 (-) 174 WP_007612543.1 anti-repressor SinI Regulator
  QRA13_RS19980 (QRA13_19980) - 4029082..4029876 (-) 795 WP_221663819.1 YqhG family protein -
  QRA13_RS19985 (QRA13_19985) - 4029898..4031568 (-) 1671 WP_038459170.1 SNF2-related protein -
  QRA13_RS19990 (QRA13_19990) gcvT 4031992..4033092 (+) 1101 WP_045208234.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=846545 QRA13_RS19970 WP_003153104.1 4028363..4028698(-) (sinR) [Bacillus velezensis strain YJ0-1 isolate soil]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=846545 QRA13_RS19970 WP_003153104.1 4028363..4028698(-) (sinR) [Bacillus velezensis strain YJ0-1 isolate soil]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991