Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QRA13_RS16950 Genome accession   NZ_CP128184
Coordinates   3454907..3455551 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3449907..3460551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS16925 (QRA13_16925) - 3450323..3450664 (-) 342 WP_007613435.1 hypothetical protein -
  QRA13_RS16930 (QRA13_16930) degQ 3451130..3451270 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  QRA13_RS16935 (QRA13_16935) - 3451401..3452330 (+) 930 WP_224223773.1 polyprenyl synthetase family protein -
  QRA13_RS16940 (QRA13_16940) comX 3452327..3452497 (+) 171 WP_045208751.1 competence pheromone ComX -
  QRA13_RS16945 (QRA13_16945) comP 3452475..3454826 (+) 2352 WP_286279635.1 histidine kinase Regulator
  QRA13_RS16950 (QRA13_16950) comA 3454907..3455551 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  QRA13_RS16955 (QRA13_16955) - 3455573..3455956 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  QRA13_RS16960 (QRA13_16960) mnhG 3455996..3456370 (-) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  QRA13_RS16965 (QRA13_16965) - 3456354..3456638 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  QRA13_RS16970 (QRA13_16970) - 3456638..3457114 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  QRA13_RS16975 (QRA13_16975) - 3457120..3458601 (-) 1482 WP_224223772.1 Na+/H+ antiporter subunit D -
  QRA13_RS16980 (QRA13_16980) - 3458594..3458935 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  QRA13_RS16985 (QRA13_16985) - 3458935..3459366 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=846527 QRA13_RS16950 WP_003152052.1 3454907..3455551(+) (comA) [Bacillus velezensis strain YJ0-1 isolate soil]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=846527 QRA13_RS16950 WP_003152052.1 3454907..3455551(+) (comA) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864