Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QRA13_RS15010 Genome accession   NZ_CP128184
Coordinates   3075333..3076022 (+) Length   229 a.a.
NCBI ID   WP_198161198.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3070333..3081022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS14985 (QRA13_14985) degS 3070616..3071779 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  QRA13_RS14990 (QRA13_14990) degU 3071856..3072545 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QRA13_RS14995 (QRA13_14995) - 3072643..3073491 (+) 849 WP_045209019.1 DegV family protein -
  QRA13_RS15000 (QRA13_15000) comFA 3073600..3074985 (+) 1386 WP_224223856.1 DEAD/DEAH box helicase Machinery gene
  QRA13_RS15005 (QRA13_15005) - 3075043..3075327 (+) 285 WP_003151389.1 competence protein ComFB -
  QRA13_RS15010 (QRA13_15010) comFC 3075333..3076022 (+) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  QRA13_RS15015 (QRA13_15015) - 3076096..3076515 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  QRA13_RS15020 (QRA13_15020) flgM 3076585..3076851 (+) 267 WP_224223855.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRA13_RS15025 (QRA13_15025) - 3076866..3077348 (+) 483 WP_224223854.1 flagellar protein FlgN -
  QRA13_RS15030 (QRA13_15030) flgK 3077364..3078881 (+) 1518 WP_044801917.1 flagellar hook-associated protein FlgK -
  QRA13_RS15035 (QRA13_15035) flgL 3078893..3079810 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  QRA13_RS15040 (QRA13_15040) - 3079902..3080471 (+) 570 WP_007407476.1 DUF6470 family protein -
  QRA13_RS15045 (QRA13_15045) fliW 3080501..3080932 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25215.80 Da        Isoelectric Point: 8.0779

>NTDB_id=846522 QRA13_RS15010 WP_198161198.1 3075333..3076022(+) (comFC) [Bacillus velezensis strain YJ0-1 isolate soil]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=846522 QRA13_RS15010 WP_198161198.1 3075333..3076022(+) (comFC) [Bacillus velezensis strain YJ0-1 isolate soil]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598