Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QRA13_RS15000 Genome accession   NZ_CP128184
Coordinates   3073600..3074985 (+) Length   461 a.a.
NCBI ID   WP_224223856.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3068600..3079985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS14980 (QRA13_14980) - 3069746..3070393 (-) 648 WP_007614107.1 YigZ family protein -
  QRA13_RS14985 (QRA13_14985) degS 3070616..3071779 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  QRA13_RS14990 (QRA13_14990) degU 3071856..3072545 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QRA13_RS14995 (QRA13_14995) - 3072643..3073491 (+) 849 WP_045209019.1 DegV family protein -
  QRA13_RS15000 (QRA13_15000) comFA 3073600..3074985 (+) 1386 WP_224223856.1 DEAD/DEAH box helicase Machinery gene
  QRA13_RS15005 (QRA13_15005) - 3075043..3075327 (+) 285 WP_003151389.1 competence protein ComFB -
  QRA13_RS15010 (QRA13_15010) comFC 3075333..3076022 (+) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  QRA13_RS15015 (QRA13_15015) - 3076096..3076515 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  QRA13_RS15020 (QRA13_15020) flgM 3076585..3076851 (+) 267 WP_224223855.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRA13_RS15025 (QRA13_15025) - 3076866..3077348 (+) 483 WP_224223854.1 flagellar protein FlgN -
  QRA13_RS15030 (QRA13_15030) flgK 3077364..3078881 (+) 1518 WP_044801917.1 flagellar hook-associated protein FlgK -
  QRA13_RS15035 (QRA13_15035) flgL 3078893..3079810 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52314.66 Da        Isoelectric Point: 10.1065

>NTDB_id=846521 QRA13_RS15000 WP_224223856.1 3073600..3074985(+) (comFA) [Bacillus velezensis strain YJ0-1 isolate soil]
MSEGASEFSEVRSFFYGRHLLRSEIPFSDQRINVFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFGAPSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRQPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=846521 QRA13_RS15000 WP_224223856.1 3073600..3074985(+) (comFA) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGAGTTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGTTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTGGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTTTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGTTATCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGCAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATAAGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCAGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625